Pairwise Alignments

Query, 403 a.a., Type II secretion pathway protein XcpS from Pseudomonas putida KT2440

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (467), Expect = 4e-51
 Identities = 107/394 (27%), Positives = 206/394 (52%), Gaps = 3/394 (0%)

Query: 10  YSLKALGRQGV-VQLQIDAEDADQARRQAEDQGLRVLSLRSSGGALRGMAWRREAAFDLV 68
           Y  K +   G  V  Q+ A    + R + +DQ +++  L+    +L      R  + D+ 
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71

Query: 69  LFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLYEGRSLSQALGQQPRVF 128
           + +++L+T+L  G+P++ AL+ + +    A  + +LA++ + +  G  LS+A+      F
Sbjct: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131

Query: 129 PPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVYPLLLLLVGGGVVLFLL 188
             LYV LV++ E +G L +   R  +YR++ + +R K++ A +YP +++LV  GV   +L
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 189 GYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTVGGVAALWLLRRHP-RV 247
             V+P F  +F+G G ELPW ++ ++++  ++ A      +     +  L  LR++  ++
Sbjct: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251

Query: 248 RYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMARGLLGNAAAQ-GL 306
           R   S    + P +   L    +A+F R+L      GIPIL ++       GN   +  +
Sbjct: 252 RLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAI 311

Query: 307 EQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCADFHDQEIGRWVE 366
            +  +    G+P+  A+        + L+++  GE+SG L +ML + A  ++ E+   V+
Sbjct: 312 NEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVD 371

Query: 367 WFVKLFEPLLMTFIGLLIGLIVILMYMPIFELAS 400
              K+ EPL++ F+G ++G +V+ MY+PIF L S
Sbjct: 372 NLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMS 405