Pairwise Alignments

Query, 403 a.a., Type II secretion pathway protein XcpS from Pseudomonas putida KT2440

Subject, 423 a.a., type IV pilus biogenesis protein PilC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  177 bits (449), Expect = 5e-49
 Identities = 107/384 (27%), Positives = 203/384 (52%), Gaps = 8/384 (2%)

Query: 24  QIDAEDADQARRQAEDQGLRVLSLRSSGGALRGMAWRREAAFDLVLFSQELSTLLNAGLP 83
           ++    A + R Q + QG+   ++R    AL  +   +    D+ + +++++T+L AG+P
Sbjct: 41  ELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDPKITPMDIAMVTRQIATMLAAGVP 100

Query: 84  LIDALESLAEKSPAATARKVLAELVRQLYEGRSLSQALGQQPRVFPPLYVALVQSSERTG 143
           L+  +E L         R++LA ++ ++  G  LS AL    R F  LYV LV + E +G
Sbjct: 101 LVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG 160

Query: 144 ALGDALTRYISYRQRLDLVRQKLVGASVYPLLLLLVGGGVVLFLLGYVVPRFSQVFEGMG 203
           +L     R  +YR++ + ++ K+  A  YP  +++V   V   LL +VVP+F  +F+G G
Sbjct: 161 SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFG 220

Query: 204 TELPWLSRVLMQVGLFLHAQQAPLALGTVGGVAALWLLRRHPR----VRYWASCQLRRLP 259
            ELP  +++++Q+   L +    + LG +  VA ++L  R  R    VR      + ++P
Sbjct: 221 AELPAFTQLVLQISRGLQSSWY-IFLGAI--VAGVFLFVRAHRNSQIVRDRVDEAVLKIP 277

Query: 260 ALHQRLMMYELARFYRSLGILLQGGIPILTAMGMARGLLGNAA-AQGLEQASQRVGEGLP 318
           A+   L    +ARF R+L      G+P++  +  A G  GNA   + + +  Q V  G+ 
Sbjct: 278 AIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKAILKIRQEVMAGMQ 337

Query: 319 LSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCADFHDQEIGRWVEWFVKLFEPLLMT 378
           ++ A+    L   + ++++  GE+SG+L  ML + +  ++ ++   V+    L EP++M 
Sbjct: 338 MNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMV 397

Query: 379 FIGLLIGLIVILMYMPIFELASSI 402
            IG ++G +++ MY+PIF++   +
Sbjct: 398 VIGTVVGGLIVAMYLPIFQMGKVV 421