Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 448 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  288 bits (738), Expect = 2e-82
 Identities = 174/464 (37%), Positives = 262/464 (56%), Gaps = 27/464 (5%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           IL+V+D+  +    R  L  +GY V+   SA  A   ++R   D    D  L   +G D+
Sbjct: 11  ILLVDDEAAILRTFRYCLEDRGYTVMTAASAAQAEAILQRQVFDLCFLDLRLGEDNGLDV 70

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124
           L+ +   AP ++V+++T +  V+ AV AM+ GA  YL KP    +L+L+  K L   +M 
Sbjct: 71  LQQMRMLAPWMRVVIVTVHSAVDTAVDAMQAGAADYLLKPCSPEQLRLSAAKQLEVRQMA 130

Query: 125 RTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGTG 184
             L   +    Q+S   AL   SP M+ +  T RQV D +          +LI GE+GTG
Sbjct: 131 ARLEALEGEIKQRS--DALGSHSPAMMAVLETARQVADTDAN--------ILILGESGTG 180

Query: 185 KELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAADG 244
           K  +ARA+H    RSK  F+  NC S+ A+L+E+ELFGH +GAFT A E  +G V  ADG
Sbjct: 181 KGELARAIHTWSRRSKKAFVTINCPSLSADLMESELFGHNRGAFTGATESTLGRVNQADG 240

Query: 245 GTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGKF 304
           GTLFLDEIG+  L LQ KLL+ ++D+   R+G    R+ D+R+++ATN NLE+MV++GKF
Sbjct: 241 GTLFLDEIGDFPLALQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVREGKF 300

Query: 305 RRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYSW 364
           R DL +RL +I L +P +  R +D+L LA  FLA   + YG+P   FS  A + L  Y W
Sbjct: 301 REDLLYRLNVITLNLPPMRERPEDVLALAERFLASFVKNYGRPARGFSDAAIAALKTYRW 360

Query: 365 PGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTL-VDEPLAQQPMAAMFEMPRHEPEPGT 423
           PGNVRELRN++E+  ++ P ++++   L L   +  + P   +P+               
Sbjct: 361 PGNVRELRNVVERASIICPQQMIEVSHLGLGEQVGSNAPRIGEPL--------------- 405

Query: 424 SLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGL 467
           SL  +E+  +   L  +D  + ++AR+LG+    L  + ++ GL
Sbjct: 406 SLEALEKAHIAGVLSTSD-TLEQAARILGIDASTLYRKRKQYGL 448