Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  274 bits (701), Expect = 4e-78
 Identities = 178/474 (37%), Positives = 267/474 (56%), Gaps = 27/474 (5%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           + VV+DD  +   +   LS    +      AE  L  ++R  PD +++D  +PGM G  L
Sbjct: 6   VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETPDVLVSDIRMPGMDGIAL 65

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124
           L  +  + P+L VI+MT + +++ AV A ++GAF YL KP  + E    +++A+A  + +
Sbjct: 66  LNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQEQ 125

Query: 125 RTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGTG 184
           R  S    R ++      +IGE+P M       ++V  A  R++   +  VLI GE+GTG
Sbjct: 126 RKTS---HRPSENYSAPEIIGEAPAM-------QEVFRAIGRLSRSSIS-VLINGESGTG 174

Query: 185 KELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAADG 244
           KELVA ALH    R++ PFI  N A+IP +L+E+ELFGHEKGAFT A   R G  E A+G
Sbjct: 175 KELVAHALHRHSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQANG 234

Query: 245 GTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGKF 304
           GTLFLDEIG+M L +Q +LL++L D    R+G     KVD+R+++AT+ NLE++V QGKF
Sbjct: 235 GTLFLDEIGDMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKF 294

Query: 305 RRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYSW 364
           R DLF RL +I + +P L  R QDI  L +HFLA  ++  G      +     +L    W
Sbjct: 295 REDLFHRLNVIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPRTVDILTKLDW 354

Query: 365 PGNVRELRNMLE-QTVLLAPNEVVQAHQLNLCMTLVDEPLA-----------QQPMAAMF 412
           PGNVR+L NM    TV+ + +EV+ +   +L   L+ E  A           Q    A  
Sbjct: 355 PGNVRQLENMCRWLTVMASGSEVLPS---DLPSELLSERKASHFDNDISWQKQLETWAKS 411

Query: 413 EMPRHEPE-PGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKL 465
            +   E E    +LP+ ER L+   L  T+ +  ++A++LG  R+ L  ++++L
Sbjct: 412 ALASGETELLAYALPEFERILLEAALHHTNGHKQEAAKVLGWGRNTLTRKLKEL 465