Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  284 bits (727), Expect = 4e-81
 Identities = 178/489 (36%), Positives = 270/489 (55%), Gaps = 48/489 (9%)

Query: 2   EHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSG 61
           +  +L+VEDDE L + +   L+L GYE +    AE AL ++K    D V++D  + GM G
Sbjct: 5   QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64

Query: 62  HDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATE 121
             LLR++    P+L V++MT Y N++DAV AMK+GA  Y+ KP              A E
Sbjct: 65  LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKP-------------FAPE 111

Query: 122 RMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGET 181
            +   +S Y   ++  +G  A++ ++  +        ++L    ++A  D   V+I G +
Sbjct: 112 VLLNMVSRYAPVKSDDNG-DAVVADTKSL--------KLLALADKVAKTDAN-VMILGPS 161

Query: 182 GTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEA 241
           G+GKE+++R +H    R +GPFI  NCA+IP N+LEA LFG+EKGAFT A +   G  E 
Sbjct: 162 GSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQ 221

Query: 242 ADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQ 301
           A GGT+ LDEI EMDL LQAKLL++L++R + R+G+ K  K+D+RV++ +N +L+Q VQ 
Sbjct: 222 AQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQA 281

Query: 302 GKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLG 361
           G FR DL++RL +  L  P L  R  DI  LA H +  H ++ G P    +  A + LL 
Sbjct: 282 GHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLN 341

Query: 362 YSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNL------CMTLVDEPLAQQPMAAMFEMP 415
           Y WPGNVREL N++++ ++L+ N  +Q+  + L        + + + +A + MAA    P
Sbjct: 342 YPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKP 401

Query: 416 RHEPEP-------------------GTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRD 456
             EPE                    G  L D E  ++  TL        + A  LG+S  
Sbjct: 402 VAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPR 461

Query: 457 MLRYRIEKL 465
            LRY++ K+
Sbjct: 462 TLRYKLAKM 470