Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 459 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  313 bits (801), Expect = 1e-89
 Identities = 170/464 (36%), Positives = 278/464 (59%), Gaps = 13/464 (2%)

Query: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64
           +LV++D++     +   L+  GY V   +  E  L  ++ ++ D ++TD  +P ++G ++
Sbjct: 7   LLVLDDEKNYLLVLEALLTDAGYTVTALNDPETGLAFLEESEVDVIVTDMKMPKITGREV 66

Query: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124
           L  +    P + V++MT +G++E AV+ MK GAF Y+TKP    EL L++  A    RM 
Sbjct: 67  LEQVKKNWPHIPVLIMTAFGSIESAVEVMKYGAFDYITKPFSNDELLLSVHNAAELSRMH 126

Query: 125 RTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGTG 184
           R     +E   ++ G+  +IG+S         +R+ L    R A+     VLI GE+GTG
Sbjct: 127 RQYRVLRENLEERYGMHQIIGKS-------RAIRETLGMVDR-AAPSRSTVLISGESGTG 178

Query: 185 KELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAADG 244
           KELVARA+HF   R+KGPF+  NC ++   +LE+ELFGHEKG+FT A   R G  E A G
Sbjct: 179 KELVARAIHFSSPRNKGPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQAGG 238

Query: 245 GTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGKF 304
           GTLFLDEIGE+   LQ KLL++L++R   R+G  +E +VD+R+++ATN NL++ V++G F
Sbjct: 239 GTLFLDEIGELTPELQVKLLRVLQERRFERVGGTEEVEVDIRIVAATNKNLQEEVEKGNF 298

Query: 305 RRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYSW 364
           R DLF+RL ++ + +P L  R +DI LL  HF+   +R  G     F+ EA   + GY W
Sbjct: 299 REDLFYRLNVVHIALPPLRERREDIHLLVAHFVDKLARENGVTPKTFTPEALDYMTGYEW 358

Query: 365 PGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPEPGTS 424
           PGN+R+L+N++E+ ++L   + ++    +L   L DE   +  + +  ++   + +   +
Sbjct: 359 PGNIRQLQNVVERCLVLVSGDTIRVD--DLPPELRDE---ESQLKSAVDLLPVQLDLADT 413

Query: 425 LPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLT 468
           L  +E  L+ + L R D+   K+A +L +S+ +L+Y+++K  +T
Sbjct: 414 LERIEAALIRRALVRADFVQVKAAELLAISKSLLQYKLKKYNIT 457