Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 471 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  284 bits (726), Expect = 5e-81
 Identities = 173/473 (36%), Positives = 269/473 (56%), Gaps = 15/473 (3%)

Query: 4   SILVVEDDEILADNIRTYLSLK--GYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSG 61
           S+LVV+D+ + A  +   LS +   +   V  S E AL  +       ++TD  +PG+SG
Sbjct: 11  SVLVVDDERVFAVGLARLLSTQFPDWTFDVRCSGEEALSALVHGDYAVLITDLRMPGLSG 70

Query: 62  HDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATE 121
             L+R  +AQ P L VIM+T +G+VE AV A+K+GA+ +LTKP+    L   + KA+   
Sbjct: 71  QTLMREALAQDPALTVIMLTAFGSVETAVAALKQGAYDFLTKPIDQEHLFRVVGKAMERG 130

Query: 122 RMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGET 181
            + R     +++ A       LIG+SP M  L+ ++  V       ASD    VLI GE+
Sbjct: 131 VLLRENGRLRQKAADGDLGPMLIGKSPAMQRLRKSIAAVA------ASDYT--VLIRGES 182

Query: 182 GTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEA 241
           GTGKELVARA+     R+ GPFI  NC +IP  LLE+ELFGH KGAFT A   R GL  A
Sbjct: 183 GTGKELVARAVQSLSQRADGPFIMVNCPAIPDALLESELFGHVKGAFTGADRNRKGLFMA 242

Query: 242 ADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQ 301
           AD GT+ LDEIG++   +Q+KLL+++++  +R +G  + ++V++R++++TN NLE  +  
Sbjct: 243 ADKGTILLDEIGDIPASVQSKLLRVIQEGEVRPVGTNEAQRVNVRIVASTNRNLEAKIAD 302

Query: 302 GKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLG 361
           G FR DL+FRL ++ + VP L  R +DI  +A HFL       G P   FS EA S L  
Sbjct: 303 GSFREDLYFRLNVLTINVPPLRERIEDIPHIASHFLFRVCNELGVPEKEFSNEALSYLSC 362

Query: 362 YSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPEP 421
             WPGNVREL N++ +  +  P E ++   ++     ++     +P       P ++   
Sbjct: 363 RPWPGNVRELLNLVRRMAVFCPGERIEGAFIH----RMEHGADTEPECGAGFSP-YKDAK 417

Query: 422 GTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLTRPDKRQ 474
             ++ +  R  V + L+ T  N++++AR+ G+ R  L+  ++++ +   D R+
Sbjct: 418 QVAVDEFTRSYVHRLLEHTHGNISEAARLSGVERFTLQKILKRMHIDTADYRR 470