Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 451 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  311 bits (797), Expect = 3e-89
 Identities = 185/471 (39%), Positives = 269/471 (57%), Gaps = 27/471 (5%)

Query: 1   MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60
           M H ILVV+D+ I  DN+   L  + YEV    + E A+  +  A  D VLTD  +  M 
Sbjct: 1   MTHRILVVDDEAIARDNLAILLRKRKYEVDTAANGEEAMRALAGADYDLVLTDLMMDDMD 60

Query: 61  GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALAT 120
           G  LLR +     D +VIM+TGY  VE AV AM+EGA+HYL KP  + E +  + KAL  
Sbjct: 61  GMALLRHIRQHHADTEVIMITGYATVETAVLAMQEGAYHYLAKPYRIEEARALVQKALEK 120

Query: 121 ERMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGE 180
             + + +   +E+  ++S    ++G +P ++ LK  + +V  AE          VLI GE
Sbjct: 121 RALNQEVHRLREQLRERSLPVPILGSAPCIVELKRLIAKVAPAEAS--------VLILGE 172

Query: 181 TGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVE 240
           TGTGKEL AR +H    RS   F+  NC +    LLE+ELFGHE+GAF+ A   + GL E
Sbjct: 173 TGTGKELAARMVHLFSRRSDRRFLAINCGAFNDALLESELFGHEQGAFSGAARLKKGLFE 232

Query: 241 AADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQ 300
           AA+GGTLFLDE+GEM L +Q KLL+ L++RSIRR+G   +  VD+R+++ATN +L++  +
Sbjct: 233 AAEGGTLFLDEVGEMSLAMQVKLLRTLQERSIRRVGGTVDIPVDVRLVAATNRDLKREAE 292

Query: 301 QGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLL 360
            G FR DLF+RL +++L++P L  R  DI LLAR+F    +R           +A   L 
Sbjct: 293 AGTFRADLFYRLNVVSLRMPPLSERRADIPLLARYFTEKSARDMQVAPPAIGQDALDALA 352

Query: 361 GYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRH--- 417
            Y +PGNVREL+N++E+ V+L  + V++A  L                  +FE P H   
Sbjct: 353 RYPFPGNVRELQNIMERAVVLCSDGVIKAGHL---------------PPDLFEAPDHVMR 397

Query: 418 -EPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGL 467
            +     +L D ERD +   L+    N T +AR+LG+ R  L  ++++ G+
Sbjct: 398 GDERKALTLDDNERDHIMWMLEHAGGNRTLAARLLGIDRASLWRKLKRFGV 448