Pairwise Alignments

Query, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  290 bits (742), Expect = 7e-83
 Identities = 178/472 (37%), Positives = 267/472 (56%), Gaps = 18/472 (3%)

Query: 1   MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60
           M+H +LV++D+      +R  +   G+ V+   S E  LE +   Q   VL D  +PGM 
Sbjct: 1   MKH-LLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHEQVHVVLLDMRMPGMD 59

Query: 61  GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALAT 120
           G + L  ++   P L V+M+T YG V  AV+AMK GAF YLTKP    EL   L+KA   
Sbjct: 60  GQETLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEH 119

Query: 121 ERMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGE 180
            R+       ++R  +      L+G S VM  ++  +RQ   +E          VLI GE
Sbjct: 120 RRLVVENEELRKRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEAT--------VLIMGE 171

Query: 181 TGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVE 240
           +GTGKEL+A+ALH   +R++ P ++ NCA++P +LLE+ELFG+ +GAFT A + + G  +
Sbjct: 172 SGTGKELIAQALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQ 231

Query: 241 AADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQ 300
            A GGTLFLDEIGE+ L LQAKLL++L++R +  +G V+   VD+R+I+ATN +L + V 
Sbjct: 232 LARGGTLFLDEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVA 291

Query: 301 QGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLL 360
           +G FR DL+FRL ++ +  P L  R +D+  L    L    R+  K     SA+    L 
Sbjct: 292 KGTFREDLYFRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALS 351

Query: 361 GYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPR---H 417
            +SWPGNVREL N+LE+ ++L+  + + A        L  +    +P  A  +  R    
Sbjct: 352 RHSWPGNVRELENVLERALILSRTDSLSAD------ALPPQLFGDEPQVADMQQERPVVD 405

Query: 418 EPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLTR 469
           +     SL + E+  + + LD    +  K+A  LG+SR  L+Y+++K GLTR
Sbjct: 406 DDSRPCSLDEAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGLTR 457