Pairwise Alignments
Query, 157 a.a., putative Curli fiber surface-exposed nucleator CsgB from Pseudomonas putida KT2440
Subject, 502 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 60.5 bits (145), Expect = 4e-14
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 41 IRLLPAGAGQAAVIEQQGLGNRAALDQNGQALLGRIVQSGGAQEAYILQEGSDLMAIISQ 100
I + G GQ ++ Q G+ N AA+ Q G A + +VQ G EA + G +SQ
Sbjct: 31 ISVKQTGEGQDTLVAQTGVINAAAVTQTGNAQVATVVQDGVWHEAQVNSTGDANEVTVSQ 90
Query: 101 Q-----------GNGNSASIRQSGSSNNAAIEQIGNDNSASIVQSGSGLNSSVTQAGNGQ 149
Q GN N A + Q G N ++ + +GNDN S+ Q G S V GN
Sbjct: 91 QTDWHVAAVDVTGNNNEAEVTQDGFFNQSSNDVVGNDNLVSVNQLGELNESYVEITGNEN 150
Query: 150 HVQITQ 155
+ Q
Sbjct: 151 SAFVEQ 156
Score = 53.5 bits (127), Expect = 5e-12
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 47 GAGQAAVIEQQGLGNRAALDQNGQALLGRIVQSGGAQEAYILQEGSDLMAIISQQGNGNS 106
G A + Q G N+++ D G L + Q G E+Y+ G++ A + Q+G+ N
Sbjct: 103 GNNNEAEVTQDGFFNQSSNDVVGNDNLVSVNQLGELNESYVEITGNENSAFVEQEGDENL 162
Query: 107 ASIRQSGSSNNAAIEQIGNDNSASIV------QSGSGLNSSVTQAGN 147
A R G +N+ I+Q GN+N A ++ G+ + SV Q GN
Sbjct: 163 AVFRVEGDNNDGDIKQYGNNNQAGLIALDLSANVGNNNDVSVEQIGN 209
Score = 52.0 bits (123), Expect = 1e-11
Identities = 34/98 (34%), Positives = 45/98 (45%)
Query: 25 DNADLAPGNDLGEPVIIRLLPAGAGQAAVIEQQGLGNRAALDQNGQALLGRIVQSGGAQE 84
+NAD+ G+ +I L+ G AA I Q G GN D + SG
Sbjct: 404 NNADVTALQHRGDLNLIDLIIEGDENAAEITQAGSGNWVGGDSSSSFAASSFGVSGDNNS 463
Query: 85 AYILQEGSDLMAIISQQGNGNSASIRQSGSSNNAAIEQ 122
I Q G+D + + SQ GN NS S+ QSG N A + Q
Sbjct: 464 LMITQTGNDNLVLGSQAGNNNSISVTQSGDMNVATVVQ 501
Score = 45.4 bits (106), Expect = 1e-09
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 54 IEQQGLGNRAAL--DQNGQALLGRIVQSGGAQEAYILQEGSDLMAIISQQGNGN------ 105
+EQ G N + + N A + + G ++ EG + A I+Q G+GN
Sbjct: 387 VEQDGDQNETIITVEGNNNADVTALQHRGDLNLIDLIIEGDENAAEITQAGSGNWVGGDS 446
Query: 106 -----SASIRQSGSSNNAAIEQIGNDNSASIVQSGSGLNSSVTQAGNGQHVQITQY 156
++S SG +N+ I Q GNDN Q+G+ + SVTQ+G+ + QY
Sbjct: 447 SSSFAASSFGVSGDNNSLMITQTGNDNLVLGSQAGNNNSISVTQSGDMNVATVVQY 502
Score = 43.9 bits (102), Expect = 4e-09
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 61 NRAALDQNGQALLGRIVQSGGAQEAYILQEGSDLMAIISQQGNGNSASIRQSGSSNN--- 117
N ++ Q G+ + Q+G A + Q G+ +A + Q G + A + +G +N
Sbjct: 29 NEISVKQTGEGQDTLVAQTGVINAAAVTQTGNAQVATVVQDGVWHEAQVNSTGDANEVTV 88
Query: 118 --------AAIEQIGNDNSASIVQSGSGLNSSVTQAGNGQHVQITQ 155
AA++ GN+N A + Q G SS GN V + Q
Sbjct: 89 SQQTDWHVAAVDVTGNNNEAEVTQDGFFNQSSNDVVGNDNLVSVNQ 134
Score = 43.9 bits (102), Expect = 4e-09
Identities = 29/112 (25%), Positives = 44/112 (39%)
Query: 36 GEPVIIRLLPAGAGQAAVIEQQGLGNRAALDQNGQALLGRIVQSGGAQEAYILQEGSDLM 95
G+ I + G A + G N L Q G A G + + +G +
Sbjct: 292 GDDNDITIKQKGDSNGAEFQVWGDSNDVDLKQRGDANFATFGAYGTDNDFDLSSKGDNNE 351
Query: 96 AIISQQGNGNSASIRQSGSSNNAAIEQIGNDNSASIVQSGSGLNSSVTQAGN 147
+ G NS I Q G +N A ++ GNDN ++ Q G + +T GN
Sbjct: 352 LVAFATGEDNSIEISQEGDANFAYVDATGNDNEVNVEQDGDQNETIITVEGN 403
Score = 41.2 bits (95), Expect = 2e-08
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 28 DLAPGNDLGEPVIIRLLPAGAGQAAVIEQQGLGNRAALDQNGQALLGRIVQSGGAQEAYI 87
DL+ D E V G + I Q+G N A +D G + Q G E I
Sbjct: 342 DLSSKGDNNELVAFA---TGEDNSIEISQEGDANFAYVDATGNDNEVNVEQDGDQNETII 398
Query: 88 LQEGSDLMAIISQQ-------------GNGNSASIRQSGSSN-----------NAAIEQI 123
EG++ + + Q G+ N+A I Q+GS N ++
Sbjct: 399 TVEGNNNADVTALQHRGDLNLIDLIIEGDENAAEITQAGSGNWVGGDSSSSFAASSFGVS 458
Query: 124 GNDNSASIVQSGSGLNSSVTQAGNGQHVQITQ 155
G++NS I Q+G+ +QAGN + +TQ
Sbjct: 459 GDNNSLMITQTGNDNLVLGSQAGNNNSISVTQ 490
Score = 40.8 bits (94), Expect = 3e-08
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 58 GLGNRAALDQNGQALLGRIVQSGGAQEAYILQEGSDLMAIISQQGNGNSASIRQSGSSNN 117
G N +++Q G+ + +G A++ QEG + +A+ +G+ N I+Q G++N
Sbjct: 125 GNDNLVSVNQLGELNESYVEITGNENSAFVEQEGDENLAVFRVEGDNNDGDIKQYGNNNQ 184
Query: 118 A-----------------AIEQI------------GNDNSASIVQSGSGLNSSV-TQAGN 147
A ++EQI GNDNS I Q G V AG+
Sbjct: 185 AGLIALDLSANVGNNNDVSVEQIGNNNFGAAKGIAGNDNSVDIYQKGDNHTGFVYALAGS 244
Query: 148 GQHVQITQ 155
+ + Q
Sbjct: 245 ENDISMEQ 252
Score = 40.8 bits (94), Expect = 3e-08
Identities = 26/107 (24%), Positives = 38/107 (35%)
Query: 49 GQAAVIEQQGLGNRAALDQNGQALLGRIVQSGGAQEAYILQEGSDLMAIISQQGNGNSAS 108
G + + + QG N + Q G + G + + + Q G A G N
Sbjct: 283 GDSLIADIQGDDNDITIKQKGDSNGAEFQVWGDSNDVDLKQRGDANFATFGAYGTDNDFD 342
Query: 109 IRQSGSSNNAAIEQIGNDNSASIVQSGSGLNSSVTQAGNGQHVQITQ 155
+ G +N G DNS I Q G + V GN V + Q
Sbjct: 343 LSSKGDNNELVAFATGEDNSIEISQEGDANFAYVDATGNDNEVNVEQ 389
Score = 35.4 bits (80), Expect = 1e-06
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 21 EDLMDNADLAPGNDLGEPVIIRLLPAGAGQAAVIEQQGLGNRAALDQNGQALLGRIVQSG 80
++ +D N +G+ +I + G I+Q+G N A G + + Q G
Sbjct: 268 DNTVDITQDGDSNTVGDSLIADI--QGDDNDITIKQKGDSNGAEFQVWGDSNDVDLKQRG 325
Query: 81 GAQEAYILQEGSDLMAIISQQGNGNSASIRQSGSSNNAAIEQIGNDNSASIVQSGSGLNS 140
A A G+D +S +G+ N +G N+ I Q G+ N A + +G+
Sbjct: 326 DANFATFGAYGTDNDFDLSSKGDNNELVAFATGEDNSIEISQEGDANFAYVDATGNDNEV 385
Query: 141 SVTQAGNGQHVQIT 154
+V Q G+ IT
Sbjct: 386 NVEQDGDQNETIIT 399
Score = 33.5 bits (75), Expect = 5e-06
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 72 LLGRIVQSGGAQEAYILQEGSDLMAIISQQGNGNSASIRQSGSSNNAAIEQIGNDNSASI 131
L G + + E + Q G +++Q G N+A++ Q+G++ A + Q G + A +
Sbjct: 18 LSGHALAASTINEISVKQTGEGQDTLVAQTGVINAAAVTQTGNAQVATVVQDGVWHEAQV 77
Query: 132 VQSGSGLNSSVTQ-----------AGNGQHVQITQ 155
+G +V+Q GN ++TQ
Sbjct: 78 NSTGDANEVTVSQQTDWHVAAVDVTGNNNEAEVTQ 112
Score = 32.3 bits (72), Expect = 1e-05
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 42/158 (26%)
Query: 20 AEDLMDNADLAPGNDLGEPVIIRLLPAGAGQAAVIEQQGLGNRAALDQNGQALLGRIVQS 79
+ D++ N +L N LGE + G +A +EQ+G N A G G I Q
Sbjct: 120 SNDVVGNDNLVSVNQLGELNESYVEITGNENSAFVEQEGDENLAVFRVEGDNNDGDIKQY 179
Query: 80 GGAQEAYILQ-----------------------------EGSDLMAIISQQGNG------ 104
G +A ++ G+D I Q+G+
Sbjct: 180 GNNNQAGLIALDLSANVGNNNDVSVEQIGNNNFGAAKGIAGNDNSVDIYQKGDNHTGFVY 239
Query: 105 ------NSASIRQSGSSNNAAIEQ-IGNDNSASIVQSG 135
N S+ Q GS+N A + G+DN+ I Q G
Sbjct: 240 ALAGSENDISMEQEGSNNTAYLSMTTGDDNTVDITQDG 277
Score = 27.7 bits (60), Expect = 3e-04
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 104 GNSASIRQSGSSNNAAIEQIGNDNSASIVQSGSGLNSSVTQAGNGQHVQITQ 155
G S + + N +++Q G + Q+G ++VTQ GN Q + Q
Sbjct: 17 GLSGHALAASTINEISVKQTGEGQDTLVAQTGVINAAAVTQTGNAQVATVVQ 68