Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 669 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  292 bits (747), Expect = 4e-83
 Identities = 209/644 (32%), Positives = 305/644 (47%), Gaps = 63/644 (9%)

Query: 69  LRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQG 128
           LR +  LV+   Q        RY+ L+ P L    L SN R+FQ      I+  + K  G
Sbjct: 69  LRPLDWLVAEIRQLPADATAERYQLLLRPWLWWLSLASNNRVFQNLATSDIVTTIFKAHG 128

Query: 129 VNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLAL 188
              ++LK    +  RE+CVQ  ETDL F++RL  EEGI + F H    H L++ D   A 
Sbjct: 129 FTDFQLKLTGSYTPREYCVQYSETDLAFVSRLLEEEGIFWFFTHEEGTHTLVLADSNDAF 188

Query: 189 GQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRD 248
             I  G          +    +G      R + G    + CL+ +    Q         D
Sbjct: 189 APIPNGPTVN------YLGQRIGE-----RELHGIRSGQVCLQAVAGVYQAT-------D 230

Query: 249 YTFTHPQ---YRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDAR 305
           Y FT P    Y Q       S+         +++PG Y   A G   T  R+  LR   +
Sbjct: 231 YEFTTPTTSLYSQAEAVAGPSSV--------YEHPGGYTAKAQGDALTKQRVDGLRSQEQ 282

Query: 306 IAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGTRYK 365
               E D   L PG  FTL  H    LN+ W   SV HE +          DS     Y+
Sbjct: 283 RFVGESDCRWLVPGYWFTLAGHEDTTLNIDWVVTSVSHEASH---------DS-----YR 328

Query: 366 QEALLVPGRTEWRPAPL-PKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENN 424
                +P  T +RP  L PKPR+     A VVG  GEEI+ D++GR+K+ FPWDR  +N+
Sbjct: 329 NRFEAIPKATVYRPPRLTPKPRMY-TQTALVVGKAGEEIWTDEYGRIKLQFPWDRTGKND 387

Query: 425 EFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLP 484
           E SSCWVRV   W+G  +G   +PRIGQ+VI+ +++ DPD+P++TG  Y G+   PY LP
Sbjct: 388 ETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALP 447

Query: 485 EHKTRMTIKSQTHK-GEGFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTER 543
            ++T+  IK+Q+ K G GFNELRFED+   +EVF+ A++D N  V +D T  VG+D T  
Sbjct: 448 ANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEVFLQAQKDFNINVLNDTTATVGHDETLT 507

Query: 544 VERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNH 603
           V+   T ++ +D  E +  ++    G+  V      DSL +     +T G D+    G +
Sbjct: 508 VQNARTRTV-KDGDETVTLEK----GKRSVTIQTGSDSLDVKDTRTVTVGSDQTHSTGGN 562

Query: 604 RQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTTKVYDIQVSESLTIRSPAGLLRVD 663
            +     N+++ + G+    V+G  TLQ+G +    +   D+ V  S +I   AG    +
Sbjct: 563 YEHKVTGNYSLTVDGNLTIKVSGTLTLQSGGSFAIKSGA-DLAVQASTSISQKAGTALSN 621

Query: 664 GAGITLD-----------GLALAFKGPVSQQATGSNRVTSTSGV 696
            AG +L+           G++L  K    Q   G   +T   G+
Sbjct: 622 QAGTSLENKAGTTLTNDAGISLVNKAAAEQTVDGGGMLTIKGGL 665