Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  436 bits (1120), Expect = e-126
 Identities = 239/639 (37%), Positives = 355/639 (55%), Gaps = 50/639 (7%)

Query: 8   RFTFQPLVGRSEFE---VVSFELDEAISSP---------FRLQLELVSFEDDVDFAQLLD 55
           R  FQ  V   E E   V  FE  E++S           FR Q++L S   ++   Q +D
Sbjct: 3   RLQFQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVD 62

Query: 56  KPVLFTLWQGERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKT 115
           +    T+ +  + ++ ++G+V   S+G+TG   T Y   + P L R  LRSN RIFQQ++
Sbjct: 63  QTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQS 122

Query: 116 VPQILEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPK 175
           VP+I+ I+L+  G+  Y          REFCVQ  ETDL F+ R+AAEEG+VY   H  +
Sbjct: 123 VPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQ 182

Query: 176 QHLLIITDRLLALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRY 235
           +H L+ TD   +  ++++                     V Y ++ GG+   P +  L++
Sbjct: 183 KHTLLFTDSSDSQPKLAK--------------------PVPYNALAGGEINLPYVVDLQF 222

Query: 236 SEQVRTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTAT 295
               + +    +DY+F  P Y    +       +Q  NYE FD PGRYK DA G  F+  
Sbjct: 223 KTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQI 282

Query: 296 RLTALRHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEA 355
           RL  LR DA +A+ + D+  L  G+ F L +H    +N  W  V  +H+GTQ  +LQEE 
Sbjct: 283 RLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEG 342

Query: 356 ADSQQGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSF 415
                 T Y  +  L+P    WR  P  KP++DGP +ATVVGP+GEEIYCD +GRVKV F
Sbjct: 343 GSG--ATTYSNQLKLIPAHITWRARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHF 400

Query: 416 PWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCG 475
           PWDR S +NE SSCWVRV+Q WAG  +GSMAIPR+G +VI+ ++N DPDQP+ITGRTY  
Sbjct: 401 PWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHA 460

Query: 476 NQLPPYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHA--------ERDQNNI 527
               PY LP+HKT+  ++++TH+G+G+NEL FED+ G +++ +HA        E D   +
Sbjct: 461 TNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEV 520

Query: 528 VKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRN 587
           ++HD+   V NDR  R++R++ +++  + R  IA D S  +G +  H++G   ++  G+ 
Sbjct: 521 IRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKE 580

Query: 588 HRITTGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAG 626
             + +G   + + G        A  T++ GG   +V AG
Sbjct: 581 ISLKSGAKIVVEAG--------AELTLKAGGSFVKVDAG 611