Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  437 bits (1124), Expect = e-126
 Identities = 244/668 (36%), Positives = 358/668 (53%), Gaps = 62/668 (9%)

Query: 35  FRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHGLVSTFSQGETGFDRTRYRAL 94
           FR +++L S   ++   Q++DK     L++  + ++ VHG+V  FSQG+ G   T Y+  
Sbjct: 42  FRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101

Query: 95  VEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDL 154
           + P L R  LR N RIFQ++TVP+IL I+L+  G+N Y          REFCVQ  E+D+
Sbjct: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYRESDI 161

Query: 155 DFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDDEDEGFHNDDVGPDQ 214
           DF+ RLAAEEG+VY F H   +H L  +D   +L ++                    P+ 
Sbjct: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL--------------------PEP 201

Query: 215 VLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNY 274
           + Y ++ GG    P +  L Y  Q   +    +DY+F  P Y            +Q   Y
Sbjct: 202 IPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRY 261

Query: 275 ERFDYPGRYKRDAVGVPFTATRLTALRHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNV 334
           + FD PGRYK D  G  F+  RL  LR  A  A  + ++  L+ G  F L EH    +N 
Sbjct: 262 QHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNR 321

Query: 335 HWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMAT 394
            W  VS++H+G Q  +LQE+       T Y  +  L+PG   WR  P PKP++DGP +AT
Sbjct: 322 DWVVVSINHQGEQPQALQEDGGSG--ATTYSNQFSLIPGHLHWRAEPQPKPQVDGPMIAT 379

Query: 395 VVGPKGEEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDV 454
           VVGP+GEEI+CD+ GRVK+ FPWDR S  NE SSCWVRVSQGWAG  +G +AIPRIG +V
Sbjct: 380 VVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEV 439

Query: 455 IIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQ 514
           I++++N DPDQP+ITGRTY     PPY LPEHKT+  ++++TH+GEGFNEL FED+ G++
Sbjct: 440 IVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKE 499

Query: 515 EVFIHAERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVH 574
           ++++HA++D + ++++D TT + +D    VE D+   I  ++   +  +    +   +V 
Sbjct: 500 QIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQHLTVEWESREAVTGEQV- 558

Query: 575 EIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGE 634
                  LSI  +  + TGK  + + G             EI      V AG   +    
Sbjct: 559 -------LSIEGSLHVKTGKVWVNEAG------------TEI-----HVKAGQKVV---- 590

Query: 635 AIRHTTKVYDIQVSESLTIRSPAGLLRVDGAGITLDGLALAFKGPVSQQATGSNRVTSTS 694
                     I+    +T+++    ++VD AG+ L G AL          +GS    +  
Sbjct: 591 ----------IEAGSEITVKAGGSFVKVDPAGVHLSG-ALVNLNSGGSAGSGSGFGGAMP 639

Query: 695 GVPAPGEP 702
            +P   EP
Sbjct: 640 ALPGGLEP 647