Pairwise Alignments

Query, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 941 a.a., Rhs element Vgr protein from Dechlorosoma suillum PS

 Score =  177 bits (448), Expect = 3e-48
 Identities = 166/606 (27%), Positives = 255/606 (42%), Gaps = 101/606 (16%)

Query: 15  VGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHG 74
           VG  E   V    +E++S  +R+++  +S +  ++  QL+ +     L   +   + + G
Sbjct: 32  VGSEELLPVEARGEESVSGDYRVEVGCLSPDTHLELKQLIGRIAELNLLLADGGHKTISG 91

Query: 75  LVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQ------- 127
           L++           +R+  ++ P L+    R+N R+FQ K+VP+I+  +L          
Sbjct: 92  LIAEARHEGADGGFSRFALVIVPGLSLLTHRTNSRVFQDKSVPEIVHTLLSEHRDAGGPW 151

Query: 128 -GVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRF-------------DHT 173
                ++ +    +  R +C+Q  E+D DF+ RL AEEGI  R+             D T
Sbjct: 152 AAACRWQNRLAKDYPQRSYCLQYRESDRDFIRRLLAEEGIATRYEFQEEDSSGQRQDDAT 211

Query: 174 PKQHLLIITDRLLALGQISRGAIKTDDEDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRL 233
           P   L++  D                 E   FH  D   +     S+   D AR    RL
Sbjct: 212 PLHTLVLFDDPY--------EPTPAQQEKIRFHRADASEEA---DSLTAWDTAR----RL 256

Query: 234 RYSEQ------VRTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDA 287
           R  +        +    +Q D   T  Q  Q  Q       +    +    Y G    D 
Sbjct: 257 RSGKSQLLAWDYKPVTPLQADAPGTTDQGEQGGQVESRLEAYDPQAH----YYGADNDDL 312

Query: 288 VGVPFTATRLTALRHDAR---IAEVEGDD-VR-LQPGLSFTLIEHPRED----------- 331
                  +R T LR D+R     + +G   VR L  G  F L +HPR +           
Sbjct: 313 -------SRYTQLRQDSRDRAAKDYQGQSSVRGLTAGQWFQLEDHPRHEGEDDDSRRFLV 365

Query: 332 --LNVHWRTVSVHHEGTQFTSLQEEAADSQQGTR-----------YKQEALLVPGRTEWR 378
             LN H R             L   AA  Q GT            Y+     V   T   
Sbjct: 366 RHLNWHARNNLPGDLTDGLPGLLASAA-GQHGTASDAAGATGDQPYRNTFTAVRRDTPIA 424

Query: 379 P--APLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESEN-------NEFSSC 429
           P  AP  KP   GP  ATVVGP+GEEI+ D  GR+K+ F W RE ++       ++ SSC
Sbjct: 425 PDYAPYQKPTAKGPQTATVVGPQGEEIHTDDLGRIKIQFHWAREQDHPDGGAALDDRSSC 484

Query: 430 WVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPY-----DLP 484
           W+RV+  W G +WG   +PRIGQ+V+++++  D D+P++    Y G+  PP       LP
Sbjct: 485 WIRVAVPWGGANWGHQYLPRIGQEVLVEFLEGDIDRPVVMAGLYNGSHRPPTYSGAGSLP 544

Query: 485 EHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHAE--RDQNN--IVKHDETTRVGNDR 540
            ++T   IKS+ +KG G+NEL F+D  G     + +E  + Q+N   + H  +   G  R
Sbjct: 545 ANRTLAGIKSKEYKGNGYNELLFDDSTGELRAKLSSEHGKTQHNQGYLIHPRSEGKGQPR 604

Query: 541 TERVER 546
            E  E+
Sbjct: 605 GEGFEQ 610