Pairwise Alignments

Query, 787 a.a., outer membrane protein assembly factor from Pseudomonas putida KT2440

Subject, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  592 bits (1527), Expect = e-173
 Identities = 329/830 (39%), Positives = 489/830 (58%), Gaps = 47/830 (5%)

Query: 1   MNYPRLLLSILLLKATLAQA------SPFRIADIRVNGLQRVSAGSVFGALPLNVGDQAD 54
           M   +L  S+L + A+ +         PF + DI+V GLQRV+ G+   +LP+ VGD  D
Sbjct: 1   MRLNKLFASMLFVGASFSGTVLADTFQPFEVTDIQVEGLQRVALGAALLSLPVKVGDTVD 60

Query: 55  DRRLVDSTRSLFKTGFFQDIQLSRDGNVLIINVVERPSVSSIEIEGNKAISTEDLMKGLK 114
             +L  + +SL+ +  F++I +S +  VLI+ V ERP++S++  EGNK I  E L + L 
Sbjct: 61  QLKLQQAIKSLYASTNFENISVSHEDGVLIVKVTERPTISAVTFEGNKDIKDEQLQESLD 120

Query: 115 QSGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEVDAEVVPQPRNRVALKIKINEGTVA 174
            SG+  GE   R  L G+   LQ  Y   G+Y A+V+A+V+  PRNRV LK K  E   A
Sbjct: 121 GSGVKVGESLDRTMLTGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTESLAA 180

Query: 175 AIQHINIVGNNVFDDETLGQLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRG 233
            I+ IN+VGN+ F D  L  + ELK    W   F  + +Y ++KL  DLE +++YY ++G
Sbjct: 181 EIRQINVVGNHEFTDAELIGMLELKDYVAWWDLF-GERRYQKQKLQADLETIKTYYHNKG 239

Query: 234 YINMDIASTQVSITPDKKHVYITVNINEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQPGQ 293
           YI  ++ STQV++TPD+K +YIT+N+NEGEKY V+DV L+GDL   E+ +KS+L ++ G 
Sbjct: 240 YIRFEVTSTQVAMTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAGD 299

Query: 294 VFSRKVMTTTSELITRRLGNEGYTFANVNGVPQPNDQDHTVDIMFVVDPGKRAYVNRINY 353
           +++   +T   E+ ++ LG  GY +  V   P+ +D+   V +   + PGKR YV  IN+
Sbjct: 300 MYNGGDVTFAEEMYSKYLGRFGYAYPEVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINF 359

Query: 354 RGNTKTEDEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPQVPGTDDQVDV 413
            GNT TEDEV+RRE+RQMEG W ++  ++QSK RL RLGFF+ V+ ET QVPGTDD VDV
Sbjct: 360 TGNTVTEDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDV 419

Query: 414 NYSVEEQASGSITASVGFAQSAGLILGGSISQSNFLGTGNKVSIGLTRSEYQTKYNFGFV 473
              V+EQ SGS  A VG+   +GL L   + Q+NFLGTGN+  + L+ ++Y    N  + 
Sbjct: 420 AVKVKEQPSGSFNAGVGYGTESGLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYT 479

Query: 474 DPYFTADGVSLGYNLFYNSTDYSDYYDDGVSYYAINSYGAGVSFGYPINETSRLTYGLTL 533
           DPY+T DGVSLG ++++N  D +   +  +  Y  +SYG  ++ G+PINE +R+  G+  
Sbjct: 480 DPYWTKDGVSLGGSVYWNEFDAN---EANLERYKNSSYGVALNSGFPINEYNRINGGIGY 536

Query: 534 QHDDISP-GTYSADEIYDFISREGK-----SFNNLKASIGWSESTLNKGVLATRGHSQSL 587
           +H+ IS    Y     +  I R+       SF+N + S+GW  STLN+G   T G SQ L
Sbjct: 537 RHNTISEISAYEQALRFYNIYRDDDPNADLSFDNFELSLGWYRSTLNRGTFPTDGSSQRL 596

Query: 588 TLMATTPGSDLSFYKLDYNGQAFLPV--TSNTTLRLHTNLGYGNGYGSTDG----LPFYE 641
           +   T P SDL ++K D++   + P+  + +  L     LGYGNGYG  +     LPF+E
Sbjct: 597 SGKMTVPASDLQYFKTDFDTNYYFPINRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWE 656

Query: 642 SYNAGGQGSVRGFKDGTLGPR-------STPATGAYSNAGQAYYSDRDT------DVLGG 688
           +Y +GG  S+RGFK  ++GPR       S P +   S  G +   D +         +GG
Sbjct: 657 NYYSGGSSSLRGFKSNSVGPRSFYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGG 716

Query: 689 NILITGGAEYLFPLPFVKD--QSQLRSSVFVDAGNVYADTCYLSTTQGCGS--------- 737
           N + T   E + P PF+ +   + +R+S FVDAGNV+      +  Q   +         
Sbjct: 717 NAIATASLELIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDY 776

Query: 738 VDLAQMAVSLGVGVTWYSPMGPLSFSLAAPLKKPDNAETQVFQFSLGQTF 787
            D A++  S GV + W SPMGP+ FSLA P+K+ +  +T++F F++G+TF
Sbjct: 777 SDPARIRASWGVSLQWLSPMGPMVFSLAWPVKEYEGDQTEIFSFNIGKTF 826