Pairwise Alignments

Query, 233 a.a., CpxR-Pasp DNA-binding transcriptional two-component system regulator from Pseudomonas putida KT2440

Subject, 244 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  146 bits (368), Expect = 4e-40
 Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 9/230 (3%)

Query: 4   VLLVDDDRELTEMLSLYLAREGFQATAADTGEEGETLALSGHFQVVVLDVMLPGISGIEV 63
           +L+VDD+  +  +L   LA  G++   A  GEE      +    +VVLDVM+P + G  V
Sbjct: 8   ILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYGV 67

Query: 64  LRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPYL 123
            + +R  S VP+++LTA GD  DRI GLELGADDYV KP SP EL AR+R++LRRV+   
Sbjct: 68  CQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE--- 124

Query: 124 MGETSAPEVPEQ--VRSGALKMWPGRREARWGAATLELTGSEFSLLEALARQAGQLVSKQ 181
             ++ A  +P    ++  ++++   +R+   G   + LTG EFSLLE L  ++G+  S+ 
Sbjct: 125 --KSGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRA 182

Query: 182 DLSLNALGRPLTRY--DRRIDVHVSSIRQKLGPRADGSSWIQSVRGMGYM 229
           ++     G    R+   R +DVH+S +R KL         I + RG GY+
Sbjct: 183 EILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGYL 232