Pairwise Alignments

Query, 293 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 1e-34
 Identities = 85/294 (28%), Positives = 148/294 (50%), Gaps = 16/294 (5%)

Query: 3   LKALRCCVEIVRQGSFTKAAQHLHIAQPALSMAVTRLEEELGVTLFNRTTRKVILTAEGE 62
           +K L+C + +V   +FT+AAQ   I QP LS  + RLEE LG TL  R  +KV LT  G+
Sbjct: 5   IKTLQCFLTLVETENFTRAAQKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQ 64

Query: 63  QFLPRIASALREMDVARQELRDMADLKRGEVRLGIPPMFGLHYVPGLMNAFRKSYPGIAM 122
            F       L +    ++++ +++ LK G +RLG+ PM     + GL+ ++RK YPG+ +
Sbjct: 65  LFEHSAREILGQWHRLQEDMSNLSGLKSGRLRLGVCPMMS-SLIIGLLTSYRKRYPGVEL 123

Query: 123 TVFEGSAEDIGHRLEQREIDLALLESRRVPPDKESILLGSD----EMLACMHPDHPYAGK 178
            ++E         L    +D+A      +P   E+ L+        +LAC+   HP A K
Sbjct: 124 QMYEYGGFGCEQALLNNSLDIAF---TALPTTHETELINQPLTKYPLLACLPEAHPLAAK 180

Query: 179 AYLTAEDLRNTDMVVFDRTFVQRHLLDAFFAEHGITYQVALQS---NFVSLVVQAALDNM 235
           +YL+ +D      ++++  F    L++    + G+   +A +S   +F++ +V+A   +M
Sbjct: 181 SYLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLATMVEA---DM 237

Query: 236 GVATLLRSVQQRTPG--IVGVPFRPAQQMSFRLCWRSGEYLSLASKRFIDFAAQ 287
           G+A L   + Q+     +V  P +PA      L WR    L+ A+   ++ + Q
Sbjct: 238 GLAILPEPICQKLSNSKLVFRPMQPALTWDLALIWRQNLPLTPAANALLELSKQ 291