Pairwise Alignments

Query, 627 a.a., p-coumarate CoA-ligase (EC 6.2.1.12) (from data) from Pseudomonas putida KT2440

Subject, 554 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 124/585 (21%), Positives = 241/585 (41%), Gaps = 78/585 (13%)

Query: 53  LERLVHWAQVRPDTTFIAARQADGAWRSISYVQMLADVRTIAANLLGLGLSAERPLALLS 112
           +E L HWA  R D  ++  +   G +   ++ ++   V+ +A  L  LGL     +A+LS
Sbjct: 9   IEMLAHWANTRGDEIYLR-QPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPGDKIAVLS 67

Query: 113 GNDIEHLQIALGAMYAGIAYCPVSPAYALLSQDFAKLRHVCEVLTPGVVFVSDSQPFQRA 172
            N  E     L  M+ G    P+ P     + +   +R+V +      +F+     +   
Sbjct: 68  KNCAEWFITDLALMHGGYISVPIYP-----TANPDTIRYVLQHSGAKAIFLGKLDHWADQ 122

Query: 173 FEAVLDDSVGVISVRGQVAGRPHISFDSLLQPGDLAAADAAFAATGPDTIAKFLFTSGST 232
              V  + + +      +  +    ++ LL  G+    +A      PD I   ++TSGST
Sbjct: 123 EAGVGGELLRLAMPYDTMPAQ--YQWEQLLNMGN-PLIEAPLPE--PDQIMTLIYTSGST 177

Query: 233 KLPKAVITTQRMLCANQQMLLQTFPTFAEEPPVLVDWLPWNHTFGGSHNLGIVLYNGGSF 292
             PK  I T        Q +++   T   +   L+ +LP       +H    V   G SF
Sbjct: 178 GQPKGAIQTFASYGWTCQAVVRDLRTNGNDR--LLSYLPL------AHITERVAIEGSSF 229

Query: 293 YLDAGKPTPQGFAETLRNLREISPTAYLTVPKGWEELVKALEQDPALREVFFARIKLFFF 352
           Y  +     +     + +++   PT + +VP+ W     +L Q   + ++  +++ L   
Sbjct: 230 YSGSVVAFVESLDSFVADVQRAKPTVFFSVPRLW-----SLFQKNIIDKIGVSKLNLLLK 284

Query: 353 AAAGLSQSVWDRLDR-IAEQHCGERIRMMA-----------------GLGMTEA---SPS 391
               +S  V  ++ + +   HC    R++                  GL + EA   + +
Sbjct: 285 IPL-ISSLVKHKIHKGLGLNHC----RLLGSGSAPIPPSLIHWYHSIGLNICEAWGMTEN 339

Query: 392 CTFTT----GPLSMAGYVGLPAPGCEVKLVPVGDKLEARFRGPHIMPGYWRSPQQTAEAF 447
           C ++       +   G VG P   C+++    G+  E   + P +M  Y+  P+ TA AF
Sbjct: 340 CAYSIINYPFDVRKIGTVGKPVQDCQIRQ---GEDGELLIKSPGLMTAYYLQPEATAAAF 396

Query: 448 DEEGFYCSGDALKLADARQPELGLMFDGRIAEDFKLSSGVFVSVGPLRNRAVLEGSPYVQ 507
           D +GF+ +GD      A   +  +   GR+ ++FK + G +V+  P+  +  L   P+V+
Sbjct: 397 DADGFFHTGDLC----AIDADGCVTITGRVKDNFKTAKGKYVAPVPIERK--LAQDPHVE 450

Query: 508 DIVVTAPDRECLGLLVFPRLPECRRLAGLAEDASDARVLANDTVRSWFADWLERLNRDAQ 567
            I V           +   LP    L  L+E A+   + A + VR+     L+ +N   +
Sbjct: 451 LICV-----------IGSGLPHPVALVQLSEGAN---LQAREEVRASLKATLDSVNPHLE 496

Query: 568 GNASRIEWLSLLAEPPSIDAGEITDKGSINQRAVLQRRAAQVEAL 612
            +   ++ + ++ EP SI+   +T    I +  + +  + +V+ +
Sbjct: 497 SH-EHVDAIVVVNEPWSIENDVLTPTLKIKRHVLEKAFSERVDGI 540