Pairwise Alignments

Query, 256 a.a., nickel ABC transporter ATP-binding subunit from Pseudomonas putida KT2440

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  149 bits (375), Expect = 2e-40
 Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 12/256 (4%)

Query: 4   SVLEIRGLRIETQAGV----LVHDVDLQLRRGEVCTLVGASGSGKSLSCLGLLDLLPPGL 59
           +++E+R L +E   G     +V  V   ++RGE   LVG SGSGKS++   +L LLP  L
Sbjct: 5   NLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPL 64

Query: 60  A-------RTQGQLLLDGQPLAASSVRGRLTSLVLQNPRSAFNPVRNMASHAIETLR-QR 111
           A       +  GQ LL  +      +RG   +++ Q P ++ NP+ ++     E L   +
Sbjct: 65  AHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHK 124

Query: 112 GITSAVARARMAHCLDAVGLADTERVLQSFAFQLSGGMLQRMMIALALMAETPFLLADEP 171
           G++  VA  R    L+ VG+ +  + L++   +LSGG  QR+MIA+AL  E   L+ADEP
Sbjct: 125 GLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEP 184

Query: 172 TSDLDALSQARFLDLLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQPAHE 231
           T+ LD   Q + L+LL +L    G+ +LL++HD+ +V R A +V VM+ G IVE     E
Sbjct: 185 TTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEE 244

Query: 232 LFQRPASATARTLLHA 247
           LF+ P     R LL A
Sbjct: 245 LFRAPQHPYTRELLGA 260



 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 24/264 (9%)

Query: 1   MSPSVLEIRGLRI--ETQAGVLVHDVD---------LQLRRGEVCTLVGASGSGKSLSCL 49
           + P +L++  L++    + G+    VD           L +G+   +VG SGSGKS   L
Sbjct: 271 VGPPLLQVEDLKVWFPIKKGLFKRTVDYIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGL 330

Query: 50  GLLDLLPPGLARTQGQLLLDGQPLAASSVRG-----RLTSLVLQNPRSAFNPVRNMASHA 104
            +L L+      +QG +  +G+ L + + +      R   +V Q+P  + +P   ++   
Sbjct: 331 AILRLIG-----SQGGIRFEGKQLDSLTQQQVRPLRREMQVVFQDPFGSLSPRMCVSQIV 385

Query: 105 IETLRQRGI-TSAVARARMAHCLDAVGLADTERVLQSFAFQLSGGMLQRMMIALALMAET 163
            E LR   I T A     +   L  VGL    R    +  + SGG  QR+ IA AL+ + 
Sbjct: 386 GEGLRIHKIGTEAEQEQAIIAALKEVGLDPETR--NRYPHEFSGGQRQRIAIARALVLKP 443

Query: 164 PFLLADEPTSDLDALSQARFLDLLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRI 223
             +L DEPTS LD   Q + ++LL  L   + L  L ++HD+ VV   + Q+ V++ G++
Sbjct: 444 ALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQV 503

Query: 224 VECQPAHELFQRPASATARTLLHA 247
           VE   A  +F  P     + LL A
Sbjct: 504 VEQGDARSIFAAPQHPYTQQLLEA 527