Pairwise Alignments

Query, 256 a.a., nickel ABC transporter ATP-binding subunit from Pseudomonas putida KT2440

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  142 bits (357), Expect = 2e-38
 Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 8/242 (3%)

Query: 12  RIETQAGVLVHDVDLQLRRGEVCTLVGASGSGKSLSCLGLLDLLPP-GLARTQGQLLLDG 70
           ++E      V DV  QL RGE   +VG SGSGKS++   ++ LL        Q ++  DG
Sbjct: 36  KVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRATIAPQARIEYDG 95

Query: 71  QPLAASS------VRGRLTSLVLQNPRSAFNPVRNMASHAIETLR-QRGITSAVARARMA 123
           + +   S      +RG   S++ Q P S+ NPV  + S  IE +R  R ++   A  R  
Sbjct: 96  RDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAERAL 155

Query: 124 HCLDAVGLADTERVLQSFAFQLSGGMLQRMMIALALMAETPFLLADEPTSDLDALSQARF 183
             L  V + D E  L  +  QLSGG  QR+MIA+AL  +   L+ADEPT+ LD   QA+ 
Sbjct: 156 ELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQAQI 215

Query: 184 LDLLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQPAHELFQRPASATART 243
           L+L+ +L Q  G+ V+L+THD+ VV + +D V VM+ G + E      LF  P  A  R 
Sbjct: 216 LNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAYTRR 275

Query: 244 LL 245
           LL
Sbjct: 276 LL 277



 Score =  110 bits (275), Expect = 6e-29
 Identities = 82/242 (33%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 12  RIETQAGVLVHDVDLQLRRGEVCTLVGASGSGKSLSCLGLLDLLPPGLARTQGQLLLDGQ 71
           R E +  V V  + L LRR E   LVG SGSGK+     L+ LL        G++  +G+
Sbjct: 314 RPEFKELVAVDGLSLNLRRHETLGLVGESGSGKTTFGQALIRLLNTD----GGEIYFEGE 369

Query: 72  PLAASSVRGRLT-----SLVLQNPRSAFNPVRNMASHAIETLRQRGITSAVARARMAHCL 126
           P+     +G         +V Q+P S+ NP  ++     E L   G+     + R+    
Sbjct: 370 PIHDKDRKGMRPLRSKIQIVFQDPFSSLNPRMSVGQIIEEGLIVNGMGEN-RKDRLKRVE 428

Query: 127 DA-VGLADTERVLQSFAFQLSGGMLQRMMIALALMAETPFLLADEPTSDLDALSQARFLD 185
           DA V       +L  F  + SGG  QR+ IA A+  E  F+L DEPTS LD   QA+ ++
Sbjct: 429 DALVSAGMPSNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIE 488

Query: 186 LLMELVQVHGLGVLLVTHDMGVVARCADQVAVMEAGRIVECQPAHELFQRPASATARTLL 245
           LL  L    GL  L+++HD+ VV     +V VM+ G+IVE  P  E+   P +A    L+
Sbjct: 489 LLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDGKIVEEGPVSEVLNNPKTAYTERLV 548

Query: 246 HA 247
            A
Sbjct: 549 KA 550