Pairwise Alignments

Query, 683 a.a., putative TonB-dependent receptor from Pseudomonas putida KT2440

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 52.4 bits (124), Expect = 7e-11
 Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 50/237 (21%)

Query: 10  AVLSVLAVFSLSPLSLAVAETLPIENSTLTLGAVNVTSTESGPLATSSVLSSVDILGGDI 69
           AVLSVLA         A AET P     + + A  +      PL  S V  SV +L G+ 
Sbjct: 9   AVLSVLAA------GFAHAETEPSHYEEVVVTANRIEQ----PL--SEVAGSVAVLEGET 56

Query: 70  LEKMPVTYSWELFSRAPGVMLTEFNQGTTSGKLSFRGFNGEGEVNAVKLLIDGIPS---- 125
           LEK   T  ++  ++ PGV +T          ++ RG  G    N + ++ DGI S    
Sbjct: 57  LEKQGKTELYDALNQEPGVSVT--GGAGRPQNITIRGMTG----NRIAIVRDGIQSADGY 110

Query: 126 NTNDGNMPFIDSVFPM-DIDSIEVVRGTSDPRYGLNNIAGNVNINTRTGGN-------YN 177
              D N  +  + F + ++  I+VV+G S   YG   I G V I ++   +       Y 
Sbjct: 111 GAADINDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYV 170

Query: 178 KARLRYGSFNTR------------------EVQLAKGIETSNWTQNYFFARQQVDGY 216
            A L Y   + R                   +   +G ET N+ Q+ +   ++VDGY
Sbjct: 171 DAALTYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLY--NREVDGY 225