Pairwise Alignments

Query, 733 a.a., Sensory box protein/GGDEF domain protein from Pseudomonas putida KT2440

Subject, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  357 bits (917), Expect = e-103
 Identities = 231/737 (31%), Positives = 381/737 (51%), Gaps = 19/737 (2%)

Query: 6   TSYHSMALSESQRDILGMIATNHQLHDILTAICLMIDAQDPGTLCSILLTDAQGKHLLKG 65
           T ++     E    IL M+     L DIL A+ L I+ Q  GT  S+LL    GK +L G
Sbjct: 16  TPFNQNVSLECYNGILSMLLNGAPLADILHALVLKIEDQRLGTHASVLLLSEDGKRVLTG 75

Query: 66  AAPGLPPAYSDAIHGLPIGPQEGTCGTAAFRRELVVTADIARDPSWERFRSLALGYNLRS 125
           AAP LP +Y+  IHG+ IGP+ G+CGTAA+  + V+  DI   P W  ++S AL + LR+
Sbjct: 76  AAPHLPDSYNQVIHGVEIGPEVGSCGTAAYTGQRVIVEDIEHHPYWALYKSFALVHGLRA 135

Query: 126 CWSLPLLSHEGSVLGTFALYQDQAIAPSEVQIHRLTCAAQLAAIAIRHERDGQRLEESEQ 185
           CWS P+   +G VLGTFA+Y  +  +P+   +  +  AA+LA++AI   R      E ++
Sbjct: 136 CWSEPIKDTQGKVLGTFAMYYKEIKSPTVADLTLIAEAARLASLAIERSRS----LEFQR 191

Query: 186 RFRSLFTYNPNPVFALDRAGNIQSVNPAGLKLKAGAATDLVGHHFSHLVFEEDLPKVNQH 245
               +F   P  +   + + ++   N A   +      D++  +        +  ++   
Sbjct: 192 LAVKIFDRLPLALVITNASHSVLYANDAFKLMVCLQPDDILAFNPEQFFSPSEPHEIASL 251

Query: 246 FFAARAGEPQRFE-ARVRDESDDKQLIMDIANLPIMVNGEIVGVFGIARDISKQKHYERQ 304
           F     G+  + E   +R+  +   L + +       + ++ G   +  D+S++K   + 
Sbjct: 252 FNHLSEGKMWQGELVGLRNNGETFYLDLTVTVFRESHSADL-GFAWLFSDVSERKKAAQL 310

Query: 305 LSINASHDGLTGLLNRLSLEDRLVQACRSSRQRKVQLAVMYIDLDGFKSINDSIGHYFGD 364
           +   A++D LTGL NR +L  R +Q   ++       + M +DLD FK +ND+ GH  GD
Sbjct: 311 IKYQANNDSLTGLANRNALF-RQIQELINADSLTPGFSFMLMDLDNFKQVNDTYGHDKGD 369

Query: 365 QVLIEVAQRLTQQVRPADTVVRMGGDEFVVLLTDLLRDEDAVPVAERLLASIGKPYCIQ- 423
            +L+++ +++   + P     R+GGDEF +LL  ++   +   +A+++   + + Y +  
Sbjct: 370 VLLVQMVEQVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQVYRRYELSH 429

Query: 424 GIDLHVSTSIGITVSDGHIEQPMKLIQQADMAMYKAKQQGRNNFQWYTSDLNHRVCEHRS 483
              ++ S SIGI           +L+  AD AMY +K  GRN + ++T  +        +
Sbjct: 430 DKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQQNAERIAN 489

Query: 484 LRNDLQKAIKTQSFSLHYQPQIEARTRRVVGIEALLRWEHPVRGFISPAVFIPVAEDSGQ 543
           L   L++A++  +F L++QP ++A T  +V  E LLRW+H  + FISP  FIP+AE+SG 
Sbjct: 490 LHTLLKQALEQNAFELYFQPIVDATTGLIVRAEVLLRWQHEGQ-FISPDEFIPIAENSGL 548

Query: 544 IIPLSLWVLDTACAQLRDLCDQGFNGISMAVNISPMHFQ--------CGQFVECIQAVLS 595
           I+ +   V       + ++   G+  +S+A+N+S   F         C  F + I+  L 
Sbjct: 549 IVSIGRCVRQAVMQTIVEMQALGWP-MSLAINVSTFEFWSHELQDEFCDSFTDIIEG-LG 606

Query: 596 KHGLSAGQLELEITESLLLHNVEQAIATLHRLKDLGVRIALDDFGTGFSSLSYLKCLPID 655
                   + LEITESLL+      I  L+ L+  G++I+LDDFGTG+SSLSYL   PID
Sbjct: 607 VEDFPYELITLEITESLLMKKHAHLIQVLNELRARGIKISLDDFGTGYSSLSYLANFPID 666

Query: 656 KIKIDRSFIQDISTNPHDAAITQGIISMAHHLSLSVVAEGVETAPQVNFLERGRCDILQG 715
           +IKID+SFI  ++      A+ + I+ ++H L+L V AEGVET  Q+  +       +QG
Sbjct: 667 QIKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVTAEGVETQEQLQVMMDNHIQEIQG 726

Query: 716 YYFARPMSHEALRTFLA 732
           Y F +P+        LA
Sbjct: 727 YLFYKPIPKAVFFELLA 743