Pairwise Alignments

Query, 733 a.a., Sensory box protein/GGDEF domain protein from Pseudomonas putida KT2440

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  381 bits (979), Expect = e-109
 Identities = 220/531 (41%), Positives = 318/531 (59%), Gaps = 12/531 (2%)

Query: 207  IQSVNPAGLKLKAGAATDLVGHHFSHLVF---EEDL-PKVNQHFFAAR--AGEPQRFEAR 260
            I+SVNPA   +   +   +      HL +   + DL   + Q     +  AGE       
Sbjct: 979  IRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGE-----IW 1033

Query: 261  VRDESDDKQLIMDIANLPIMVNGEIVGVFGIARDISKQKHYERQLSINASHDGLTGLLNR 320
            +R+++    L+    N  I V GE      +  DI+++K  E  L   AS D LTGL NR
Sbjct: 1034 IRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNR 1093

Query: 321  LSLEDRLVQACRSSRQRKVQLAVMYIDLDGFKSINDSIGHYFGDQVLIEVAQRLTQQVRP 380
               +DRL  A   + +    +A++++DLD FK INDS+GH+ GD +L  VA RL   VR 
Sbjct: 1094 TLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVRE 1153

Query: 381  ADTVVRMGGDEFVVLLTDLLRDEDAVPVAERLLASIGKPYCIQGIDLHVSTSIGITVSDG 440
             DTV R+GGDEF ++L  + + + A  ++E++L +   P+ +    L++STSIGI++   
Sbjct: 1154 GDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPN 1213

Query: 441  HIEQPMKLIQQADMAMYKAKQQGRNNFQWYTSDLNHRVCEHRSLRNDLQKAIKTQSFSLH 500
              +    LI+ AD AMY AK  GRNNFQ+YT+ LN     H  L   L++AI     SL 
Sbjct: 1214 DAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLV 1273

Query: 501  YQPQIEARTRRVVGIEALLRWEHPVRGFISPAVFIPVAEDSGQIIPLSLWVLDTACAQLR 560
            YQP+   R   + G+EALLRW+H   G ISPA FIP+AE++G I  +  WV++ +C QL 
Sbjct: 1274 YQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLA 1333

Query: 561  DLCDQGFNGISMAVNISPMHFQCGQFVECIQAVLSKHGLSAGQLELEITESLLLHNVEQA 620
            +  + GF+ ISMAVN+S    +    +  I+  L+  GL A  LELE+TES+++ N +++
Sbjct: 1334 EWNELGFSDISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALELELTESMIMGNPQES 1392

Query: 621  IATLHRLKDLGVRIALDDFGTGFSSLSYLKCLPIDKIKIDRSFIQDISTNPHDAAITQGI 680
            +  L +LK LG+ IA+DDFGTG+SSLSYLK  PID +KIDR F++DI+ +P DAAIT  I
Sbjct: 1393 VNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAI 1452

Query: 681  ISMAHHLSLSVVAEGVETAPQVNFLERGRCDILQGYYFARPMSHEALRTFL 731
            I++AH L L+VVAEGVET  Q+NFL    CD +QG+  ++P+S +  +T L
Sbjct: 1453 IALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLL 1503