Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  279 bits (714), Expect = 7e-79
 Identities = 252/1057 (23%), Positives = 468/1057 (44%), Gaps = 70/1057 (6%)

Query: 10   ALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDLVA 69
            A A +  ++T  L ++    G  A     + E+P   V    +   +PGA+ +E++ LV 
Sbjct: 27   AAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVT 86

Query: 70   EPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKLMPA 129
             P E+ + E+   D+  ++++P  A  +   +   P +      Y    K       MP 
Sbjct: 87   TPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIY---NKLYSNKDWMPQ 143

Query: 130  GV-IG-PMLNDE-FSDVTFAVYALKAKGE--PQRQLVRDAETLRQQLLHVPGVKKVNIIG 184
            GV +G P++  +   DV      L  K +   Q+QL + A  L  +L  +PG + +  IG
Sbjct: 144  GVGVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIG 203

Query: 185  EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244
             Q   + V     ++   GIT   +  +L   N  SP   +     +  V+V     ++ 
Sbjct: 204  GQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVE 263

Query: 245  KIRETPV-VAQGRPLKLSDVADVERGYEDPATFLVRNDGE---PALLLGIVMREGWNGLD 300
            ++++  V +  G P+ L D+A V  G       +   D +   PA+ + +  + G N +D
Sbjct: 264  EVKQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVD 323

Query: 301  LGKALEAETAKI-NEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMG 359
            + KA+EA    + N+ +P G+ +    D         +  M K   A   V+++  L+MG
Sbjct: 324  VAKAVEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMG 383

Query: 360  WRVGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKME 419
            WR  +VV  A+ +TL I      A G   +R++L +LI ++G+LVDDAI+ +E +   M 
Sbjct: 384  WRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMA 443

Query: 420  EGYDRI-KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIAS 478
             G  ++ +    A      P +  TL      +P  F     G Y S +     + ++ S
Sbjct: 444  MGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLIS 503

Query: 479  WVVAVAFTPYLGVKLLPRIKTIEGGHAA----------IYNTRHYNRFRALLGWVIAHKW 528
              VA   +P+L  K L      E G AA                  R R  L  ++    
Sbjct: 504  LAVAFVLSPWLAGKFLKAGHHQEEGKAANGIFHKIMSPFVTAPKQGRNRLFL--LLTILA 561

Query: 529  LVAGTV-VSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWL 587
            L+AG+V +  F A VL M        P  ++ E  + L MP G+S+E+T     ++ + L
Sbjct: 562  LIAGSVLLPVFQAVVLKM-------LPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATL 614

Query: 588  RQQEEAKIVTTYIGQGPP--------RFFLAMAPELPDPSFAKIVVLTENQGAREA---- 635
                E +    Y G   P         +F+       D    ++ +L   +  R++    
Sbjct: 615  NDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGD---IQVNLLGRKERDRDSHTIA 671

Query: 636  --LKHRLREAASEGLAPGAQVRVTQLVFGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQ 693
              L+ +L E A      G +V+V ++  GP    P+   V GP      + A +V+ + +
Sbjct: 672  SQLRPQLNEIAQRF---GGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFR 728

Query: 694  ASPMMKTVNTDWGPLVPTLHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRS 753
             +  +  V+             +++ +   + +  AS+   L   + G PIT +  +   
Sbjct: 729  ETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSK 788

Query: 754  ----VQVVGRAAGQIRLDPAQIENFTLVGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPT 809
                +Q+      ++RL+  Q+ N  +   NG   P+S + +V     D  +  ++  P 
Sbjct: 789  YPIPIQIQATETAKVRLE--QVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPM 846

Query: 810  MTVRGDIAEGLQPP-----DVSTAIWKDL---QPIVTQLP--AGYKIEMAGSIEESAKAS 859
            + V GD++  L  P     ++  A+ + +   Q  + Q    +G  +   G    + +  
Sbjct: 847  VMVVGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETF 906

Query: 860  QAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVG 919
            + +     + + L  L+++ Q +S    +++    PL +IGV+P   L G  F   +++G
Sbjct: 907  RDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIG 966

Query: 920  LIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVLLTALAAILAFIPLTH 979
            +IAL+GI++RN+++L+  I+    +G+A  +AV+++   RA+P++LTALAA++  + +  
Sbjct: 967  MIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFILD 1026

Query: 980  SVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIR 1016
               +  LA +LI G FV T++TL+ +P +Y +  + R
Sbjct: 1027 DPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRKR 1063