Pairwise Alignments
Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440
Subject, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Score = 507 bits (1306), Expect = e-147
Identities = 302/1018 (29%), Positives = 543/1018 (53%), Gaps = 15/1018 (1%)
Query: 7 NLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQD 66
+++ + +R+ LI L G +++ KLGR EDP F ++Q I+T +PGATAQE+ D
Sbjct: 2 DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
Query: 67 LVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSA--VQEEFYQARKKAGDQA 124
V + +E +Q L+ ++ + G + V ++ + S+ +Q+ + + R+K D
Sbjct: 62 EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
Query: 125 KLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIG 184
+ +P G ++ND+FSDV YA+ +G +QL +TLR++L+ VPGV K +
Sbjct: 122 RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
Query: 185 EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244
EQ E IF+ S +R+A G++ + + L Q+ ++ +GSV+ Q ++ V LA
Sbjct: 182 EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
Query: 245 KIRETPVV--AQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLG 302
+ V + ++L D+A++ RGY +PA+ L+R +G+ A+ GI G N +++G
Sbjct: 242 DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
Query: 303 KALEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRV 362
A++A A++ PLGM L ++ Q+ ++ +SV F+ A+ +V +V L MG R
Sbjct: 302 DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
Query: 363 GVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEE-- 420
GV++ + LT+A VM RI+LG+LI+ALG+LVD+AI+ + ++V+ ++
Sbjct: 362 GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
Query: 421 GYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWV 480
D+ + + + T P+L GT+V F G + S GEY ++FW++ ++ SWV
Sbjct: 422 NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
Query: 481 VAVAFTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVA 540
AV TP L L ++ ++ ++A+L WV++H+ + ++ T VA
Sbjct: 482 FAVTVTPMLCHDFL----RVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVA 537
Query: 541 AVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYI 600
AV G + F P S RP+ +V++ +P G+ I +T +E + Q++ +T++I
Sbjct: 538 AVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFI 597
Query: 601 GQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLV 660
G G RF L +PE +PS+ ++++ ++ L L+ + P A ++V + +
Sbjct: 598 GGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNEL-DAKYPDASIKVWKFM 656
Query: 661 FGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDR 720
G + GPD+ LRQ+A + ++++ P + V DW VP L +
Sbjct: 657 LGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQE 716
Query: 721 LQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSN 780
Q +GLT+ +S + L G + RE + ++ RA R IEN + +
Sbjct: 717 AQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQ 776
Query: 781 -GQRVPVSQIGD-VSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVT 838
G+ +PVSQ+ D V +D +LRR +R PT+ V+ D A G+ D + + ++ I
Sbjct: 777 AGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQI-- 834
Query: 839 QLPAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGL 898
+LPAGY++ G + S A++ + P A +L ++ ++ +++++T+P +
Sbjct: 835 ELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAV 894
Query: 899 IGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQ 958
+GV L+ F PF A++G ++L G++++N ++L+ Q D G + A+++A V
Sbjct: 895 VGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVS 954
Query: 959 RARPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIR 1016
RARPVLL A IL PL F+ ++A T++ G TI+TLV +P Y++ F+++
Sbjct: 955 RARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRVK 1012
Score = 52.8 bits (125), Expect = 1e-10
Identities = 108/520 (20%), Positives = 203/520 (39%), Gaps = 35/520 (6%)
Query: 524 IAHKWLVAGTVVSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQM-----PYGTSIEQTNA 578
IA L T V +A L G + + PE ++ + P T+ E ++
Sbjct: 3 IARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSDE 62
Query: 579 TAIKVESWLRQQEEAKIVTTYIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKH 638
+E ++ +E K V + QG + + E S + Q + L+
Sbjct: 63 VTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSS-------AQLQQVWDKLRR 115
Query: 639 RLREAASEGLAPGAQVRVTQLVFGPYSPYPVAYRVMGPDAS--QLRQIAARVQSVLQASP 696
++ +A + L PGA + F Y + Y V G S QL+ ++ L P
Sbjct: 116 KVADAQRQ-LPPGAGASIVNDDFSDV--YALFYAVTGEGFSDKQLQDYVDTLRRELVLVP 172
Query: 697 MMKTVNTDWGPLVPTLHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQV 756
+ T + ++ +R+ GL+ V Q LQ SV + V
Sbjct: 173 GVAKAAT-LAEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPV 231
Query: 757 VGRAAGQIRLDPAQIENFTLVGSNGQRVPVSQIGDVSIRMEDP--ILRRRDRTPTMTVRG 814
+ ++ D ++ VGSN V + I ++S +P +L R + +
Sbjct: 232 IPKSNISSLADLTNLQ--VAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGI 289
Query: 815 DIAEGLQPPDVSTAIWKDLQPIVTQLPAGYKIEMAGSIEESAKASQAIVP---LLPIMIA 871
G ++ A+ L + +Q P G + + +S +AS A + + I
Sbjct: 290 SNVTGGNVVEMGDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIV 349
Query: 872 LTLLIIILQVRSISAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNT 931
+L++ + VRS + V L + G + V+ + + Q + AL+ IAL G+L+ N
Sbjct: 350 FVVLLLFMGVRSGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALI--IAL-GMLVDNA 406
Query: 932 LILI-GQIDHNQLEGLAPFDAVVEATVQRAR-PVLLTALAAILAFI-----PLTHSVFWG 984
+++ G + Q E A VV V + P+L + I AF P + G
Sbjct: 407 IVVTDGVLVRFQQEPNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAG 466
Query: 985 TLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSRIAKP 1024
+L + ++ F+ + + P + + +++ ++ AKP
Sbjct: 467 SLFWVILYSMFLSWVFAVTVTPMLCHDFLRVKAPTKEAKP 506