Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  261 bits (667), Expect = 2e-73
 Identities = 245/1030 (23%), Positives = 459/1030 (44%), Gaps = 51/1030 (4%)

Query: 8    LSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDL 67
            LS ++V+     L L +L+   G ++F KL   E P      +++ T + GA+A  ++  
Sbjct: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62

Query: 68   VAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQD----KTPPSAVQEEFYQARKKAGDQ 123
            +   LE ++  +   D   + +R G++   V+ +      T  S +++   +A++   ++
Sbjct: 63   ITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEE 122

Query: 124  AKLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRD--AETLRQQLLHVPGVKKVN 181
            A         P +         +VY   +  E  R  + D     L  +   + GV  V+
Sbjct: 123  AD-------DPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVD 175

Query: 182  IIGEQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFD 241
            + G   + ++V    + +A  G+   DI  AL+ +N  SP G V      + VR    + 
Sbjct: 176  VSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGY- 234

Query: 242  QLAKIRETPVV---AQGRPLKLSDVADVERGYEDP-ATFLVRNDGEPALLLGIVMREGWN 297
            Q A+  E  VV   + G P+ L DVADV  G E+  +TF  ++DG   + +GIV +   N
Sbjct: 235  QSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF--KSDGIVNVSMGIVPQSDAN 292

Query: 298  GLDLGKALEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLS 357
             L++ K +  E  K+ + +P G  L+   D  V I  S+ E     F+   +V+LV ++ 
Sbjct: 293  PLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIF 352

Query: 358  MGW-RVGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVV 416
            +G  R  ++ A  VP++L   F+     G + + ITL +LIL++GL+VDDAI+ +E +  
Sbjct: 353  IGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFH 412

Query: 417  KMEEGYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALI 476
             +E G   + A+          +++ TLV  + F+P  F     G   +    ++ +A+I
Sbjct: 413  HIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472

Query: 477  ASWVVAVAFTPYLGVKLLPRIKTIEGGHAAIYNTRHYNR----FRALLGWVIAHKWLVAG 532
             S ++A+  TP LG KLL     ++ G       R + R    +R ++   I  +W  A 
Sbjct: 473  FSSLIALTLTPVLGSKLLK--ANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRW-AAP 529

Query: 533  TVVSTFVAAVLG-MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQE 591
             V++  +    G M LV  Q  P+ DR  +   ++    TS  +  A    VE  L    
Sbjct: 530  VVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRL---- 585

Query: 592  EAKIVTTYIGQGPPRFFLAMAPEL---PDPSFAKIVVLTENQGAREALKHRLREAASEGL 648
                    +GQG  + F   +P            ++++ E+   R            + L
Sbjct: 586  -----MPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKAL 640

Query: 649  APGAQVRVTQLV--FGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWG 706
            A    VRV   +  F   S  PV + + G D S+L+  A +++   + SP M   + D+ 
Sbjct: 641  AGIPDVRVFPFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYS 700

Query: 707  PLVPTLHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRL 766
               P L  ++++ R   +G++  S+S  L+ +L G  +T+  E      V  R       
Sbjct: 701  EKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFN 760

Query: 767  DPAQIENFTLVGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVS 826
            + A +    +  + G+ V +  +  +        L   ++  ++T+  ++  G       
Sbjct: 761  NAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQAL 820

Query: 827  TAIWKDLQPIVTQLPAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISA 886
              + +  Q I   LP    +  +G  ++  +   ++  +  + + +  L++  Q  S   
Sbjct: 821  DFLDQKAQEI---LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFIN 877

Query: 887  MVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGL 946
             ++V LT P+G+ G    L + GQ   I + +G+I L G++ +N ++++   +  +  G+
Sbjct: 878  PLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGV 937

Query: 947  APFDAVVEATVQRARPVLLTALAAILAFIPLTHSVFWGTLAYTLIG-----GTFVGTIMT 1001
                A+++A+ +R RP+L+TA   +   IPL  S   G  +   +G     G    T++T
Sbjct: 938  EFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVT 997

Query: 1002 LVFLPAMYSI 1011
            L+ +PAMY +
Sbjct: 998  LLVIPAMYRL 1007