Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1049 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  802 bits (2071), Expect = 0.0
 Identities = 413/1020 (40%), Positives = 643/1020 (63%), Gaps = 2/1020 (0%)

Query: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65
            FNLS  A+   SI  FL+ LI   G L   ++G+ EDP FT + M +   WPGA+ QEM+
Sbjct: 11   FNLSRWAIGHPSIARFLLALIIITGGLGLLRMGQREDPEFTFRVMVVQAVWPGASIQEME 70

Query: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
            D V   +E+++QE    D   +YTR G A   V ++  T    V + FYQ RKK GD A 
Sbjct: 71   DQVVNKIERKLQETPHLDFVRSYTRAGSAIITVQIEGDTNADEVADAFYQVRKKVGDIAN 130

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
             +P GV+GP  NDEF D    ++++   G    +L R A   R  LL  PGV+KV ++G+
Sbjct: 131  ELPEGVLGPYFNDEFGDTFITLHSISGDGFSYPELKRFAIEGRDMLLATPGVEKVVVLGD 190

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q E+I++  S   LA  G+T  D+ +A+  QN +  +GSV+T    V + V+G   ++  
Sbjct: 191  QPEKIYIDLSSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSVRISVEGDVTKVED 250

Query: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305
            IRE  + A  R ++L D+A V  G EDP     R +G  ++ +G+VM +G+N  D+GKA+
Sbjct: 251  IRELRLRAGDRTIRLGDIATVTSGLEDPYARKFRFNGHDSVQIGVVMAKGFNVTDVGKAV 310

Query: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365
            EA   +    +P G+++ +V++Q   +T ++ EF      AL++V++V FLS+GWR G+V
Sbjct: 311  EATYDRFESALPYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSFLSIGWRSGLV 370

Query: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425
            +A A+PL LA  F +M   G +  RI+LG+LI+ALGLLVDDA+I +EMM  K+EEG ++I
Sbjct: 371  IAIAIPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEMMERKLEEGLEKI 430

Query: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485
             A+++A+S TA PML+GTL+T  GF+P GFA+STAGEY  ++F++VGIAL+ SW VAV F
Sbjct: 431  DAASFAYSSTAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIALVVSWFVAVYF 490

Query: 486  TPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLGM 545
            TP+LG  +L + +   G H  +++TR Y R R  +GW + H+ +V    ++ FV ++   
Sbjct: 491  TPWLGYMILKQ-RHHAGTHHDVFDTRFYRRLRTTVGWAVRHRVVVLLMTLAIFVTSLWAF 549

Query: 546  GLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQGPP 605
              + K FFP S RPE+LV+L +P GTSI++    A  +E  +   E+ + + TYIG+G P
Sbjct: 550  QFIPKNFFPQSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMDDEDKRFIATYIGEGAP 609

Query: 606  RFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGPYS 665
            RFFL +  +L +P+FA+++V+ +++ ARE L  +LR   +E   P  + +V +L  GP +
Sbjct: 610  RFFLPLDQQLRNPNFAQLLVMAKDEPARERLIAKLRTILAEDF-PSIRAKVDRLFLGPPT 668

Query: 666  PYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQSVG 725
             +PV  RVMGPD  ++R+IA +V++  Q +PM+  ++ DW   VP +   ++QDR +++G
Sbjct: 669  GWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLEPVPAMKLVIDQDRARALG 728

Query: 726  LTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQRVP 785
            +TS  + Q LQ  ++GVP+ S R+   +V ++ R  G  R   + +++  +    G  VP
Sbjct: 729  ITSQRIRQMLQAAMSGVPLDSFRDGEETVSIMAREPGGNRHLLSAVQSVYVPTDFGGFVP 788

Query: 786  VSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAGYK 845
            VSQI  V   ME  I  RRDR PT+TVRG + +G+QP DV+  ++ +L+ +   L  GYK
Sbjct: 789  VSQIAKVVPVMEQGIEWRRDRLPTITVRGTLPDGVQPNDVAMQLFDELKGLRDGLAPGYK 848

Query: 846  IEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPVL 905
            +E+ G  E+SA++  +I    PIM+ + ++++++Q++     ++V  T PLG+IG    L
Sbjct: 849  VEIQGGAEDSAESQASIAAKAPIMLVVIVILLMVQLQHFGKAMLVLATGPLGIIGAAAAL 908

Query: 906  LLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVLL 965
            L+ G PFG  A++G+IAL GI++RN++IL+ QID +   G+   +A++ A V+R RP++L
Sbjct: 909  LISGAPFGFVAILGVIALLGIIIRNSIILVDQIDQDIAAGMERSEAIIGAAVRRFRPIIL 968

Query: 966  TALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSRIAKPE 1025
            TAL A+LA IP++  VFWG LAY ++GG  V T++T++ LPA Y+++F   P SR   PE
Sbjct: 969  TALTAVLALIPISRGVFWGPLAYAMMGGILVATVLTILVLPAGYALFFGKEPKSRKTDPE 1028