Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1016 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  742 bits (1915), Expect = 0.0
 Identities = 403/1013 (39%), Positives = 609/1013 (60%), Gaps = 8/1013 (0%)

Query: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65
            FNLS  A++ RS+  + ++    AG  ++  LGR EDP FT+K M I   WPGA+A+E  
Sbjct: 4    FNLSDWALQHRSLVWYFMIAFMAAGLFSYLDLGREEDPAFTIKTMVIQAKWPGASAEETT 63

Query: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125
              V + +EK+++EL   D T++ T PG     V+L+D T    VQ  + + R    D   
Sbjct: 64   RQVTDRIEKKLEELESLDYTKSITTPGETTVFVNLRDTTKARDVQPTWVRVRNMINDIKG 123

Query: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185
              P GV+GP  ND F DV   +YA  + G  QRQL    E +R ++L VP V +V+I+G 
Sbjct: 124  DFPQGVVGPAFNDRFGDVFGNIYAFTSDGLTQRQLRDKVEEVRAKVLQVPNVGRVDIVGA 183

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
            Q E IF+ FS  ++A LG+  + I S+L  QNA++PSG ++    ++ VRV G F     
Sbjct: 184  QDEVIFLEFSPRKVAALGLDQRTIVSSLQAQNAIAPSGVLQAGPERISVRVSGQFTSEES 243

Query: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305
            ++   +    R   L+DVA + RGY DP T L R +GEPA+ L I M+ G N L  G+AL
Sbjct: 244  LKAINLRVNDRFFPLTDVATIRRGYVDPPTSLFRFNGEPAIALTIGMKAGANLLQFGEAL 303

Query: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365
            + E  +I+  +P+G  +  V+DQ   +  +V  F    F A+ +V+++ F+S+G R G+V
Sbjct: 304  KEEMKRISADLPVGAEVHLVSDQPQIVDEAVSGFTRALFEAVAIVLVISFISLGMRAGLV 363

Query: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425
            VA ++PL LAI F+VM+ +G +  RI+LG+LI+ALGLLVDDA+IA+EMMV ++E G    
Sbjct: 364  VAISIPLVLAITFMVMSYSGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEVGDSLA 423

Query: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485
            KA+ + ++ TA PML+GTLVT  GF+P G   S AGE+T  +F ++ ++L+ SW+VAV F
Sbjct: 424  KAATHVYTSTAFPMLTGTLVTVAGFIPIGLNNSAAGEFTFTLFVVIAVSLLTSWIVAVLF 483

Query: 486  TPYLGVKLLP-RIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544
            TP LGV +LP ++K     H      R  + F   LG+ + H+WL  G  ++ F  +++G
Sbjct: 484  TPLLGVTILPDKMK-----HHHETKGRFASMFSGTLGFCMRHRWLTIGLTLAAFALSLVG 538

Query: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVE-SWLRQQEEAKIVTTYIGQG 603
            MG V++QFFP SDR E++V+  +P  +SI +TNA   K E   L  +      +TY+GQG
Sbjct: 539  MGFVQQQFFPNSDRKELIVDWNLPQNSSIAETNAQMAKFEREALTGRPGIDHWSTYVGQG 598

Query: 604  PPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGP 663
             PRF L+   E  + +F ++V++T++   R+ L+  L +A      PG    V  L  GP
Sbjct: 599  APRFVLSFDVEPSNATFGQMVIVTKSLADRDRLRQEL-QAYLRKTFPGTDALVKLLDIGP 657

Query: 664  YSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQS 723
                PV YRV GPD S++R  A ++  ++ A+P +  V  DW      +   + QD+ + 
Sbjct: 658  PVGRPVQYRVSGPDISKVRGFAQQLAGIVAANPHLGEVVFDWMEPARVIKVDVLQDKARQ 717

Query: 724  VGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQR 783
            +G+TS  ++  L  +L G  IT VR+DI  V V+GRA    R     + N  L G +GQ 
Sbjct: 718  LGVTSEDIASTLNGILDGATITQVRDDIYLVNVLGRANDAERGSIETLRNLQLSGGSGQT 777

Query: 784  VPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAG 843
            VP++ +      +E P + RR R PT+TV+  + + +QP  V   +   +     +LP G
Sbjct: 778  VPLAAVATFRYELEQPTIWRRARLPTVTVKASVIDEVQPATVVEQLKHSVGEFTAKLPVG 837

Query: 844  YKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVP 903
            Y + + G++EES K+   I+ ++PIM+ +   ++++Q++S   + +VF  +PL LIGVV 
Sbjct: 838  YSVTVGGAVEESGKSQAPIIAVVPIMLFVMATVLMIQLQSFHRLFLVFAVAPLALIGVVA 897

Query: 904  VLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPV 963
             LL    P G  A++G++AL GIL+RN++ILI QI+  + EG  P+DAVVEAT  R RP+
Sbjct: 898  ALLPSRAPLGFVAILGVLALIGILIRNSVILIVQIEQLRSEGRPPWDAVVEATEHRMRPI 957

Query: 964  LLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIR 1016
            +LTA AA LA IP+   VFWG +AY ++GG  VGT++TL+FLPA+Y  WF+I+
Sbjct: 958  MLTAAAASLALIPIAREVFWGPMAYAMMGGIIVGTVLTLLFLPALYIAWFRIK 1010