Pairwise Alignments

Query, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1042 a.a., cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  267 bits (683), Expect = 3e-75
 Identities = 238/1043 (22%), Positives = 454/1043 (43%), Gaps = 62/1043 (5%)

Query: 12   AVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDLVAEP 71
            ++  R + L   +L+  AGT           P      + I+T   G  A+E++ LV  P
Sbjct: 9    SLHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEANGMAAEEVEQLVTFP 68

Query: 72   LEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQ----AKLM 127
            +E  +       R  + +  G +   V     T       + Y AR+   ++    ++ +
Sbjct: 69   VETAVNGATGVRRVRSSSTNGFSVVWVEFDWGT-------DIYLARQIVSEKLAVVSESL 121

Query: 128  PAGVIGPMLNDEFSDV-TFAVYALKAKGEPQRQLVRDAE-TLRQQLLHVPGVKKVNIIGE 185
            P  V  P L  + S +    +  L A       L   A+ T+R +LL   GV +V ++G 
Sbjct: 122  PVNVGKPTLGPQSSILGEMLIVGLTADSTSMLDLRTIADWTIRPRLLSTGGVAQVAVLGG 181

Query: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245
              +   +    +R+   G++  ++ +   + N  +  G +   G + + R   +  ++ +
Sbjct: 182  DIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIARGVLSTPKVEE 241

Query: 246  IRETPV-VAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304
            + +  V      P+ L D+ADV+ G + P        G+PA+L+ +  +   + L+L   
Sbjct: 242  LGKAVVKTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQPATSTLELTDK 301

Query: 305  LEAETAKINEGMPLGMTLSK-VTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMG-WRV 362
            LEA    + + +P  + +S  +  Q+  I SS+       F   + V++V FL +   R 
Sbjct: 302  LEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLANVRT 361

Query: 363  GVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGY 422
             ++    +PL+L +  + +   G   + ++LG + +A+G LVDDAI+ +E +  ++ E  
Sbjct: 362  TLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENR 421

Query: 423  DRIKASAY--------AWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIA 474
             + +A  +        A      P+L+ TL+  + F+P  F     G     +     +A
Sbjct: 422  QKAEAERFSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVA 481

Query: 475  LIASWVVAVAFTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTV 534
            L AS VVA+  TP L   LL   KT +    +         +   L WV+AHK +  G+ 
Sbjct: 482  LFASTVVALTLTPVLCSYLLGSNKTNKELKESFVARWMKGIYEKALTWVLAHKRVTLGST 541

Query: 535  VSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAK 594
            +  F+ A+     + + F P+ +     + +    G S+E++N    + E  L    E +
Sbjct: 542  IVLFLIALGVFFTLGRSFLPSFNEGSFTINISSLPGISLEESNKMGHRAEELLLTIPEIQ 601

Query: 595  IVTTYIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASE-----GLA 649
             V    G+           EL + +    V ++E +   E       E  +E     G  
Sbjct: 602  TVARKTGRA----------ELDEHALG--VNVSEIEAPFELKDRPRSELVAEVREKLGTI 649

Query: 650  PGAQVRVTQLVFGPYSPY------PVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNT 703
             GA + + Q +              +A ++ G D +++  +  +++  +   P +  +N 
Sbjct: 650  TGANIEIGQPISHRIDAMLSGTKANIAIKLFGDDLNKMFSLGNQIKGAISDIPGIADLNV 709

Query: 704  DWGPLVPTLHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQ 763
            +     P L     ++ L   G+T    S+ +   L G  I+ V E  +S  ++ +    
Sbjct: 710  EQQIERPQLKIQPKREMLAKFGITLPEFSEYVNVALAGKVISQVYEQGKSFDLIVKVKDD 769

Query: 764  IRLDPAQIENFTLVGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPP 823
             R +  +I N  +  ++G++VP++ + +V   M    + R +    + +  ++A+     
Sbjct: 770  ARDEMEKIRNLMVDTNDGRKVPLNYVAEVVSSMGPNTINRENVKRKIVISANVADR---- 825

Query: 824  DVSTAIWKDLQPIVT---QLPAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQ 880
            D+ + +  D+Q  V    QLP GY IE  G  E    AS+ +     + I +  L++  +
Sbjct: 826  DLRSVV-NDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSIVIIFLLLYHE 884

Query: 881  VRSISAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDH 940
             RS+    ++ L  PL LIG V  L++      I A++G I+L GI  RN ++LI   +H
Sbjct: 885  FRSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHYNH 944

Query: 941  -NQLEGLAPFDAVVEATVQRARPVLLTALAAILAFIPLT------HSVFWGTLAYTLIGG 993
              Q+EGL  +D+VV+ ++ R  P+L+TAL++ LA IPL        +     +A  ++GG
Sbjct: 945  LQQVEGLNVYDSVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILGG 1004

Query: 994  TFVGTIMTLVFLPAMYSIWFKIR 1016
                T +    +P +Y +  + R
Sbjct: 1005 LLTSTFLNGFIVPIVYLMMHRQR 1027