Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 367 a.a., RND transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  157 bits (397), Expect = 4e-43
 Identities = 115/364 (31%), Positives = 170/364 (46%), Gaps = 9/364 (2%)

Query: 8   IVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRV 67
           ++G  +   L  CGD  P  + +  P V    +V    A + + +G V AR Q+DL FRV
Sbjct: 9   VIGLGVCALLTGCGDKKP--EEKALPRVFVQQAVPSEYAASVTLTGDVQARVQADLSFRV 66

Query: 68  SGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGL 127
            GKI++R  D G  V   Q L R+DP DL     + +  V A +AR KQ+     R + L
Sbjct: 67  GGKIIERKADVGDRVSARQVLARLDPRDLQTNVDSAEAQVAAEQARVKQSAAAFVRQQKL 126

Query: 128 VADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPG 187
           +  G  S S YD  +A   ++++ L+AAQAQ   AR    Y  L+A+A G++    AE G
Sbjct: 127 LPKGYTSQSEYDAAQAQLRSSQSALAAAQAQLANAREQLSYTALIAEAPGIITARQAEVG 186

Query: 188 QVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALAT--LFGKPAQAVPAKLRLLSDA 245
           QVV A + +  LAR G+R+AV  + E+L   P S    T  L   PA      +R ++ A
Sbjct: 187 QVVQATEPIFSLARDGERDAVFNVYESLLSEPPSDPAITISLLDDPAIKTTGTVREITPA 246

Query: 246 ADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVI 305
               T T + +  L        LG+ ++           A ++P  AL    +   VW++
Sbjct: 247 VSAQTGTVQVKVTLNDLPEGMRLGSVVSATAKSAGK--TAFELPWSALTKNLSEPAVWLV 304

Query: 306 AGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRD--GVEVMEQAQTAQVM 363
            G+  K   + V V      K ++   L  G++IV  G  LL    GVE+ E        
Sbjct: 305 DGE-GKAQLQTVTVGRYLTGKVIISDGLKGGEKIVTAGGQLLHPGVGVEIAEDTYGKSKP 363

Query: 364 GHQP 367
           G QP
Sbjct: 364 GVQP 367