Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  115 bits (288), Expect = 2e-30
 Identities = 115/357 (32%), Positives = 165/357 (46%), Gaps = 38/357 (10%)

Query: 8   IVGCLLPLALVACGDSSPGKDPRDTPP---VVKAVSVQDASALARSFSGVVVARTQSDLG 64
           I+ C LPL     G  S   +P   PP   +V+ +   ++ A A  FSGVV + T + L 
Sbjct: 16  IIACALPLL----GGCSSEAEPAPEPPRVALVEPLRPAESKAEALRFSGVVQSVTSTQLS 71

Query: 65  FRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARY 124
           F VSG+I + L+D G  V+RGQ L ++D  D  LQ R        A AR +Q   D AR 
Sbjct: 72  FEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLR-------EAEARLRQLEADLARK 124

Query: 125 RGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLA 184
           R L+A+G ++        AA +A +A   AA+   D A+   +++ L A  DGVV   LA
Sbjct: 125 RTLLAEGILA-------PAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLA 177

Query: 185 EPGQVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSD 244
           EP  VV+ G  V  +      E  V LPE+   A  S  L       A+ V A LRL   
Sbjct: 178 EPDMVVAVGTPVFEMQDNRHIEVSVDLPES---AALSIPLGPELQAEAELVIADLRLPLR 234

Query: 245 AADPITRTFEA----RYVLTGPLAS-----APLGATITLEIP-DTDTDFEAKQIPIGALF 294
             +  T+  E     R VL G           +   + LE P   +TD +  ++P+ AL 
Sbjct: 235 YKEHSTQPREGARTYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQ 294

Query: 295 DPGNGAG-VWVIAGQPAKVSWRAVEVLSVSDEKAVVKSD-LHAGDRIVALGAHLLRD 349
              +G   +W  A   A+    AVE+  V  ++A+++ D L A   I+  G   L D
Sbjct: 295 TGSDGKHFIWQAADGRAR--RLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHD 349