Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 4/217 (1%)

Query: 53  GVVVARTQSDLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARA 112
           GVV    Q  L  + SG+++   VD    VK+ Q L+ +  V  +    A Q  + +A A
Sbjct: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101

Query: 113 RAKQTGDDEARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLL 172
           + ++      RYR L   GA+S    D  +A A +A A + +AQA  + A+ +  Y  + 
Sbjct: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161

Query: 173 ADADGVVMDTLAEPGQVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATL-FGKP 231
           A  DG+V   + E G+ V+ G  ++R     +      +P+  +P     +  T+   + 
Sbjct: 162 APYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQG 221

Query: 232 AQAVPAKLRLLSDAADPITRTFEARYVLTGPLASAPL 268
            Q  P +  L S  ADP + TF+ R  L  P  SA L
Sbjct: 222 EQLKPVEFSLFS-YADPQSHTFKTRLEL--PQNSAAL 255