Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 90.9 bits (224), Expect = 5e-23
 Identities = 88/348 (25%), Positives = 148/348 (42%), Gaps = 26/348 (7%)

Query: 15  LALVACGDSSPGKDPRDT--PPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKIL 72
           L L  CG++     P     P + + V+ Q AS L  +F+GVV A  ++DL FR+SG++ 
Sbjct: 24  LLLAGCGEAPQISAPAPVVKPALTEIVASQRASDL--TFNGVVRAAQRADLAFRISGRLT 81

Query: 73  QRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLV-ADG 131
              V  G  VK+GQ L  +D       +R  + A+ AA+   K T  +  R + +     
Sbjct: 82  DIAVKEGDQVKKGQLLASLD-------SRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQ 134

Query: 132 AVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVS 191
           A+S +  D++    D AK ++       + A+   EY  + A  DGV+ +   E    V 
Sbjct: 135 AISKAELDKVTNRYDLAKNRV-------EEAKRKLEYTQITAPFDGVISEKTIENFAQVQ 187

Query: 192 AGQAVVRLARAGQREAVVYLPE--TLRPAPGSTALATLFGKPAQAVPAKLRLLSDAADPI 249
           A Q ++ L      E  + +P    L     + A+A L   P Q    KLR  S      
Sbjct: 188 ANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSD 247

Query: 250 TRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAK---QIPIGALFDPGNGAG-VWVI 305
           ++T+              +       IP  D   +      +P+ AL     G   VWV+
Sbjct: 248 SQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307

Query: 306 AGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353
             Q  +   R V++ +   ++ V+   L  G++++  G   +R+G+ V
Sbjct: 308 NAQ-NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354