Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 96/349 (27%), Positives = 150/349 (42%), Gaps = 37/349 (10%)

Query: 17  LVACG-DSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQRL 75
           LV CG +  P  +P   P  +  VSV + +  +R F     A  ++ L FRV G++    
Sbjct: 15  LVGCGKELPPVPEPDSRPAKLTTVSVGN-NTFSRQFPATTAAGDRAVLAFRVPGQLQTID 73

Query: 76  VDTGQTVKRGQPLMRMDPVD---LNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGA 132
           V  GQ VK+G+ L R++P +   L  QA A  +       RA++          L  D  
Sbjct: 74  VLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQR----------LRQDKV 123

Query: 133 VSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSA 192
           VS   +DQ +A  ++AKA    A+A          Y  L+A  DG +    AE  + V+A
Sbjct: 124 VSEQDFDQAQANHNSAKATWEQAKAN-------LRYTQLIAPYDGTISLIPAEQYEYVAA 176

Query: 193 GQAVVRLARAGQREAVVYLPETLR---PAPGSTALATLFGKPAQAVPAKLRLLSDAADPI 249
            Q V+ +      +    LP+ L       G  A       P +  P + + +   AD  
Sbjct: 177 KQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSK 236

Query: 250 TRTFEARYVLTGP--LASAP-LGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIA 306
           TR+++   V+  P  +   P +   ++L  P       A  IP  ALF    G  VW + 
Sbjct: 237 TRSYKVTMVMERPNDVGILPGMAGRVSLMAPSG----SATVIPTSALFAEQGGKYVWRV- 291

Query: 307 GQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVME 355
                VS  AV +    +E+  V + L+ GDRI+  G   + +G++V E
Sbjct: 292 DDAGLVSKAAVTL----NEQRQVLTGLNDGDRIIISGVSGVTEGIKVRE 336