Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

 Score =  303 bits (777), Expect = 4e-87
 Identities = 172/354 (48%), Positives = 226/354 (63%), Gaps = 3/354 (0%)

Query: 6   AAIVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGF 65
           AA  G             +   DPR  PP+V+           R+F+G + AR QS+LGF
Sbjct: 25  AAAAGAAFAFVFETPARDAESADPRLAPPLVRVAEATRPERAERAFTGTIAARVQSNLGF 84

Query: 66  RVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYR 125
           RV GKI++RLVD GQ VK GQ LMR+D  DL L   A++ AV AARA   Q   DE RY 
Sbjct: 85  RVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNAVAAARAVLVQAIADERRYA 144

Query: 126 GLVADG-AVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLA 184
            LV  G A +   Y+Q KAA D A AQL+AA+A+A VA N T Y+VL+A ADG V+ TL 
Sbjct: 145 TLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENETTYSVLVAGADGTVVATLG 204

Query: 185 EPGQVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSD 244
           EPGQVV+AGQAVV+LA AG REA+V LPET+RPA GS A A+++G   +   A++R +SD
Sbjct: 205 EPGQVVAAGQAVVQLAHAGLREALVALPETVRPAIGSEAEASVYGSDGRRGRARMRQISD 264

Query: 245 AADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWV 304
           AADP TRT+EARYVL G  ASAPLGAT+T+ I + +   E   +P+GA+ + G+  GVWV
Sbjct: 265 AADPQTRTYEARYVLDGDAASAPLGATVTISIRNGEGQSEV-AVPVGAVLNDGSRTGVWV 323

Query: 305 IAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQ 358
           +    A   +  +E+  + +E A V + +  G+++VALGAHLL+DG  V  + Q
Sbjct: 324 VDQASATARFVPIEIKRLGEETASV-TGIELGEQVVALGAHLLKDGAPVRTELQ 376