Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  130 bits (326), Expect = 8e-35
 Identities = 105/350 (30%), Positives = 154/350 (44%), Gaps = 5/350 (1%)

Query: 15  LALVACGDSSPGKDPRDTPPVVKAVSVQDASALAR-SFSGVVVARTQSDLGFRVSGKILQ 73
           L  V  G S    + ++T   VK V +  A       +SG V ART+ +LGFRV GKI +
Sbjct: 21  LGAVLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGFRVGGKITE 80

Query: 74  RLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAV 133
           RLV+ G  VK G  L R+D  D  L   + +  + AA  + + T   + R   L      
Sbjct: 81  RLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQLFTKSFS 140

Query: 134 SASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAG 193
           S +  DQ     D A +   AA +    A+N   Y  L AD +G+V    A+ GQVV  G
Sbjct: 141 SQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADIGQVVGTG 200

Query: 194 QAVVRLARAGQREAVVYLPE--TLRPAPGSTALATLFGKPAQAVPAKLRLLSDAADPITR 251
             VV +A  G++E  + +PE       PG       +      +   +R +S +AD  +R
Sbjct: 201 TPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREVSGSADQRSR 260

Query: 252 TFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQPAK 311
           TF  R  L        LG T T+E     +      IP+ AL        VW++    + 
Sbjct: 261 TFSVRVSLPND-ERVLLGMTATVEAA-AASSAPLVSIPLSALSKKDGQNIVWIVDRDFST 318

Query: 312 VSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361
           V  R +++   +D    V   L AGD +VA G   + + ++V  QA   Q
Sbjct: 319 VHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRLQAGEQQ 368