Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  186 bits (473), Expect = 7e-52
 Identities = 124/352 (35%), Positives = 181/352 (51%), Gaps = 8/352 (2%)

Query: 1   MRLRPAAIVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQ 60
           M+  P+  +     + L +CG  +P K P   P + + V     S +   + G V AR +
Sbjct: 1   MKTIPSFALLAATAMVLASCGKEAP-KAPEPRPALTQVVGAAGQSDML--WVGEVRARYE 57

Query: 61  SDLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDD 120
           +D GFR+ GK+++R VD G  VK+GQ L R+DPVD  L A A      AA A       +
Sbjct: 58  TDQGFRIGGKVVERKVDIGAVVKKGQILARLDPVDAGLSAAAANAQTKAAEADFLVAKAE 117

Query: 121 EARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVM 180
             R + L+    +S S++D  +A   AA A+L  A+AQA V  N   Y  L+A+ DGVV 
Sbjct: 118 YERQKKLLEKQFISQSAFDSREAQFKAALARLDQARAQAAVTGNQAGYTDLVAEKDGVVT 177

Query: 181 DTLAEPGQVVSAGQAVVRLARAGQREAVVYLPETLRPA--PGSTALATLFGKPAQAVPAK 238
           D   EPGQVVSAGQ  +RLA AG +E VV +PE       PG++A+  L+    Q+  A+
Sbjct: 178 DVKVEPGQVVSAGQPAIRLALAGDKEVVVAVPEGRMKGIEPGTSAVIRLWANQDQSYAAR 237

Query: 239 LRLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGN 298
           +R ++ AAD  TR+F+ +  +  P A   LG T  + I   +       +P  AL     
Sbjct: 238 VREVAPAADAATRSFQVKVTVLEPDAGLRLGMTAGVLIGSAEAPL---LVPTAALTRQDG 294

Query: 299 GAGVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDG 350
              VWV+  Q  +V  R+V      ++  VV+  L  G+R+V  G H L+ G
Sbjct: 295 KNTVWVVNPQSGEVQPRSVTTGPFREDGVVVEKGLARGERVVIAGVHKLQPG 346