Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 77.4 bits (189), Expect = 6e-19
 Identities = 79/324 (24%), Positives = 137/324 (42%), Gaps = 23/324 (7%)

Query: 51  FSGVVVARTQSDLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAA 110
           F+G + A   + +GF +SGK+ +  VD+G  V +GQ L ++D   L  + +  Q ++   
Sbjct: 58  FTGTIRAGNTTGVGFELSGKLSELNVDSGANVHQGQVLAKLDTRLLEAERQEIQASLAQT 117

Query: 111 RARAKQTGDDEARYRGLVADGAVSASSYDQIK---AAADAAKAQLSAAQAQADVARNATE 167
           +A          R   L   G VS    D+ +   A+ +AAK +L A+Q    +  + + 
Sbjct: 118 QADVDLATSTLKRNLELKKSGYVSEQLLDETQTQLASLEAAKKRLLASQHANQLKLDKSH 177

Query: 168 YAVLLADADGVVMDTLAEPGQVVSAGQAVVRLARAGQREAVVYLPETL--RPAPGSTALA 225
              LLA  DG++       G+VV+AG     L  +   EA + +P  +  + + G     
Sbjct: 178 ---LLAPFDGIISQRQHNLGEVVAAGSPAFTLVGSMNTEAYIGVPVAIANQFSTGQNVKV 234

Query: 226 TLFGKPAQAVPAKLRLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEA 285
           ++  +P     AK+  +S   +PI+RT + R  L  P  +  +   I         +   
Sbjct: 235 SVHNQP---FTAKIAGMSAEVNPISRTVQLRISL--PEHAKVINGEIAYLHQQQTVEQAG 289

Query: 286 KQIPIGALFDPGNGAGVWVIAGQPA----------KVSWRAVEVLSVSDEKAVVKSDLHA 335
             +PI AL D   G     +A Q +           +  R V++L  + + A ++  +  
Sbjct: 290 YWVPISALIDGIRGRWNIYVAAQNSTTKSSDITQRHIERRDVDILYTTQDMAYIQGAIKG 349

Query: 336 GDRIVALGAHLLRDGVEVMEQAQT 359
            +  V  G H L  G  V   A T
Sbjct: 350 DEHYVTQGLHKLVVGQAVSTLATT 373