Pairwise Alignments

Query, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

Subject, 425 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  353 bits (906), Expect = e-102
 Identities = 191/414 (46%), Positives = 256/414 (61%), Gaps = 23/414 (5%)

Query: 20  ATVALPMPALADFIGDSHARLELRNHYINRDFRQSNAP--QAKAEEWGQGFTAKLESGFT 77
           AT+A+P  A A FI D+ A LELRN Y NRDFRQ      Q+KAEEWGQGF  ++ESG+T
Sbjct: 17  ATLAIPTMAQAAFIEDTKAGLELRNFYFNRDFRQEGGASGQSKAEEWGQGFLLRVESGYT 76

Query: 78  EGPVGFGVDALGQLGIKLDSSRDRRNTGLLPFGPNSHEPVDDYSELGLTGKVRVSKSTLR 137
           EG VGFGVDAL   G+KL SS D   +GL+P    +  P  D+S  GLTGK +VS++ L+
Sbjct: 77  EGTVGFGVDALALQGVKLYSSEDTAGSGLMPSSYGNEAP-GDWSSFGLTGKAKVSETVLK 135

Query: 138 LGTLQPILPVVVYNDTRLLASSFQGGLLTSQDLDGLTFNAGRLTKANLRDSSGRD----- 192
           +GTLQ   P +  +D+RLL  + QG  + S+++ GLT +AG   + N RDS+        
Sbjct: 136 VGTLQFKNPAIGTSDSRLLPQTMQGAQIVSKEIKGLTLDAGYANRINHRDSTNNQVMSLN 195

Query: 193 ---------DIGYGAASSDHLDFGGGSYAITPQTTVSYYYAKLQDIYRQQFVGLIDTRPL 243
                    D G     SD   F GGSY +T   T +YYY+ L+D+Y+Q    L+   P+
Sbjct: 196 TGGRRGITIDGGAPNNQSDDFRFLGGSYQVTKDLTATYYYSNLEDLYKQHTYNLVHVLPI 255

Query: 244 AEGVSLRSDLRYFDSRNDGAERAGNIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPFV 303
           A+G SL++DLRY  S++DG+    N+DN+   AM T  +  H F   +Q+MSGD+ F +V
Sbjct: 256 ADGQSLKTDLRYSRSKDDGSS---NVDNKALGAMVTYSLSGHSFGLGYQKMSGDTGFAYV 312

Query: 304 NGG-DPFTVNLVTYNTFTRAGLDSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAETATVTN 362
            G  DPF VN V  N F  A   SWQ RYD++F ++GIPGL+FMTRY  G + E A  T 
Sbjct: 313 GGATDPFLVNYVQINDFANADEKSWQARYDFNFASIGIPGLTFMTRYITGDNFERANGTE 372

Query: 363 GRERERDTDITYVIQSGPFKDVSLRWRNVTFRSGNGLTNAVDENRLIIGYTLAL 416
           G+E ERD DI Y  Q G  K+++++WRN T R+  G  N +DENRLI+ YT+ L
Sbjct: 373 GKEWERDMDIGYTFQEGALKNLNVKWRNATARNNYG--NDIDENRLIVSYTIPL 424