Pairwise Alignments

Query, 273 a.a., non-homologous end joining protein from Pseudomonas putida KT2440

Subject, 296 a.a., Ku domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  365 bits (936), Expect = e-106
 Identities = 180/263 (68%), Positives = 217/263 (82%)

Query: 1   MARAIWKGAISFGLVHIPVALNTAVRTERVDFDWLDKRSMEPVGYKRVNKVTGKEIDKDN 60
           MARAIWKGAISFGL HIPVAL +A  ++ VDFDWLDKRSM+PVGYKRVNK TGKE+ KD+
Sbjct: 1   MARAIWKGAISFGLAHIPVALVSATSSQGVDFDWLDKRSMDPVGYKRVNKTTGKEVTKDD 60

Query: 61  IVKGVEFEKGRYVVISEEEIRKARPETTQTIDIFSFVEAGDIPLQHFDTPYYLTPDRRGG 120
           IVKGV+++KGRYV++SEEEIR A P++TQTIDIF+FV++  IPLQ+ DTPY+L PD+RGG
Sbjct: 61  IVKGVQYQKGRYVLLSEEEIRSAHPKSTQTIDIFAFVDSEKIPLQNIDTPYFLAPDKRGG 120

Query: 121 KVYALLRETLEKTGKVALATVVLHTRQHLALLRPLDHALVMITLRWPEEVRGLETLELDA 180
           KVYALLRETL KT KVALA VVLHTRQHLA L PL+ ALV++ LRWP EVR L+ LEL  
Sbjct: 121 KVYALLRETLVKTHKVALAHVVLHTRQHLAALMPLESALVLVMLRWPAEVRDLDVLELGD 180

Query: 181 SVTDSKVEKRELEMAKRLVEDMSGPWKPEDYHDAFRQTIMDLVEEKASKGKIEAVEKGDT 240
            VT+  + K ELEMAKRLVEDMS  W+P++Y D+F   IM+LVE+KA++G++EAVE    
Sbjct: 181 EVTNPTLAKGELEMAKRLVEDMSADWEPQEYRDSFEDKIMELVEKKANEGRLEAVETDPG 240

Query: 241 GAAEKGADILDLTELLKRSLGGK 263
               K AD++DLTELLKRSLG K
Sbjct: 241 EEQRKTADVIDLTELLKRSLGSK 263