Pairwise Alignments

Query, 273 a.a., non-homologous end joining protein from Pseudomonas putida KT2440

Subject, 256 a.a., Ku protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  168 bits (425), Expect = 1e-46
 Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 9/262 (3%)

Query: 3   RAIWKGAISFGLVHIPVALNTAVRTERVDFDWLDKRSMEPVGYKRVNKVTGKEIDKDNIV 62
           R+IWKG+I FGLV+IPV L + V+   +D D LD+R    + + RVN+ T KE+  + IV
Sbjct: 2   RSIWKGSIGFGLVNIPVKLFSGVQNSNLDLDMLDERDHAKIKFLRVNENTHKEVPYEKIV 61

Query: 63  KGVEFEKGRYVVISEEEIRKARPETTQTIDIFSFVEAGDIPLQHFDTPYYLTPDRRGGKV 122
           KG  F K  YVV+ + +  +A PE T+ I++ +FV+  DI   +++T YY  P+++G K 
Sbjct: 62  KGY-FLKDSYVVLDKHDFEEAAPEKTKIIELENFVDIKDINPIYYETSYYTEPEKQGKKA 120

Query: 123 YALLRETLEKTGKVALATVVLHTRQHLALLRPLDHALVMITLRWPEEVRGLETLELDASV 182
           Y LL + LEK+GK  +A  VL   ++L ++ P++H +V+  +R+ EE+R L  +     V
Sbjct: 121 YGLLLKALEKSGKAGVARFVLRNTENLCVIHPMEHVIVITKIRFQEEIRSLSEIN---KV 177

Query: 183 TDSKVEKRELEMAKRLVEDMSGPWKPEDYHDAFRQTIMDLVEEKASKGKIEAVEKGDTGA 242
            D  + K+E+++   L++  S  +    + D +   ++ +++ K SKGK   V+K     
Sbjct: 178 DDITITKKEMDVGLALIKQYSSKFDLSAFKDDYSTELLKIIKAK-SKGKRATVKKMKPQK 236

Query: 243 AEKGADILDLTELLKRSLGGKK 264
           A       DL E L +SLG KK
Sbjct: 237 ASSD----DLYEQLMQSLGSKK 254