Pairwise Alignments

Query, 302 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  168 bits (425), Expect = 2e-46
 Identities = 91/250 (36%), Positives = 136/250 (54%), Gaps = 4/250 (1%)

Query: 48  ALLIVLFAL-LCALAPHWLSSFDPYATAPADKLSP---PSLAHWFGTDELGRDLYTRVVY 103
           A ++ LF L L  LA  +L  F  Y+    D  +    PS  HWFGTD LGRDL+ R + 
Sbjct: 38  AAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLV 97

Query: 104 GARLSVLAALLAVAIALLGGLGLGVLAGFAGGHVDAALMRLIDVLLALPGLLLALAIVTA 163
           G R+S++  ++   +A+L G   G  +GF GG  D  +MR++++L A+P + L + +VT 
Sbjct: 98  GGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTF 157

Query: 164 IGFGTVPVAVAVGVGILPGFARTTRAEVLRIKTLPFVEAARLCGASWARTLLRHVLPNAW 223
            G   V + VA+G       AR  R + L +++  F+EAA +CG S    + RH++PN  
Sbjct: 158 FGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVL 217

Query: 224 SPVAVLATLDFGAAILATAGLSFLGFGAAPPAAEWGTLIANGRHFLITAPWLSLLPGLFV 283
             VAV +TL   + IL  + LSFLG G   P   WG L+  G + +  A W  L P  F+
Sbjct: 218 GIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFM 277

Query: 284 VAVVFSLNHL 293
           V  +F  N++
Sbjct: 278 VLTLFCFNYV 287