Pairwise Alignments

Query, 302 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 310 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  199 bits (507), Expect = 5e-56
 Identities = 110/292 (37%), Positives = 155/292 (53%), Gaps = 12/292 (4%)

Query: 14  PSEPRPA-ATW-----------RRRTRWQRAYQMLAPLLRRPGFSLALLIVLFALLCALA 61
           P  PRPA A W           R + R  R Y      +R P   + L I L  ++ A  
Sbjct: 6   PRAPRPARAPWVLWLLSDSPASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLVILATF 65

Query: 62  PHWLSSFDPYATAPADKLSPPSLAHWFGTDELGRDLYTRVVYGARLSVLAALLAVAIALL 121
             W++  DP     +++L PPS  HW GTD+ GRD+++R+V+G+R +++   L    A  
Sbjct: 66  APWIAPHDPLFGTLSERLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAP 125

Query: 122 GGLGLGVLAGFAGGHVDAALMRLIDVLLALPGLLLALAIVTAIGFGTVPVAVAVGVGILP 181
            GL +G  AGF GG V+AALMRL D  LA P L+LALA   A+G G     +A+ +   P
Sbjct: 126 VGLLIGTTAGFVGGIVEAALMRLTDAFLAFPKLILALAFAAALGAGLENAVLAIALTAWP 185

Query: 182 GFARTTRAEVLRIKTLPFVEAARLCGASWARTLLRHVLPNAWSPVAVLATLDFGAAILAT 241
            +AR  RAE L ++   FV AAR+CG+S  R L+  ++P     + V  +LD    IL  
Sbjct: 186 PYARIARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGVILIA 245

Query: 242 AGLSFLGFGAAPPAAEWGTLIANGRHFLITAPWLSLLPGLFVVAVVFSLNHL 293
           AGL FLG G APP  EWG +++ GR  ++   W+   PG+ +  V    N L
Sbjct: 246 AGLGFLGLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLL 297