Pairwise Alignments

Query, 353 a.a., BNR domain protein from Pseudomonas putida KT2440

Subject, 336 a.a., BNR repeat protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (310), Expect = 5e-33
 Identities = 104/359 (28%), Positives = 160/359 (44%), Gaps = 64/359 (17%)

Query: 13  CCGLPPAFAGDSVDVLAQPALHGPQALRAVLQDVARADARLVAVGERGVVLLSDDNGATW 72
           C    P+F+  S      P +  P A  +++ D+A A   LVAVGERG VL+  D    W
Sbjct: 16  CLFFSPSFSAQSEHF---PQIQ-PLAASSLVLDIAHAGQHLVAVGERGHVLVLTDK---W 68

Query: 73  RQATAVPVGVSLTAVQFIDARNGWAVGHAGVVLHSQDGGEHWSVQLDGKRAAALEVQAAE 132
           +Q    P  V LT V F++ + GWAVGH   +LH+QDGG+ WS+Q+          Q+ E
Sbjct: 69  QQVPT-PTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQM----------QSTE 117

Query: 133 AAADERRLAAAQRLLADGADKPLLALNFTDARNGLVVGAYGVAMRTDDGGRSWQSE---- 188
                              +KP L + F + + G+ +GAYG+  RT DGG +W  E    
Sbjct: 118 I------------------EKPFLDVLFLNEQEGMAIGAYGLFYRTRDGGANWTEEFHEE 159

Query: 189 ---------IGRLPNG-RGLHL-----------YALARQGNQVYIAGEQGLLLRSRDGGE 227
                    +  L N  +  +L             +A +  ++ + GE GL+  S D G+
Sbjct: 160 LLAEEDVSYLAELKNSDQAAYLTERASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQ 219

Query: 228 HYEALHGPYDGSYFAATVLPDGRLLLGGLRGSLFASDDGGDSFQALANPTPASING-LRV 286
            +      YDGS F A  L D   ++ GLRG +F +D     +  +  P  +SING +  
Sbjct: 220 SFTRTGFDYDGSMFNAIQLQDAVYVM-GLRGHVFKADLSLAQWDEIDMPVKSSINGVMAT 278

Query: 287 AGGQLLLANQAGMLLRSGLGAFAAQPVAVSDGLPLTAATTAADGSIVAVGMAGARRLEP 345
           +   L L   AG++++      ++  V    G  L +      G++   G  G   L+P
Sbjct: 279 SETSLYLVGNAGIVIQLNQDD-SSSIVTRRQGENLVSIAKDNQGNVWLSGSQGLLTLKP 336