Pairwise Alignments

Query, 312 a.a., Nodulation protein d1 from Pseudomonas putida KT2440

Subject, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  228 bits (580), Expect = 2e-64
 Identities = 117/296 (39%), Positives = 186/296 (62%)

Query: 1   MRFHHLDLNLLVALDILLEEQNITRAAERLHMTQSATSGVLGRLRTFFEDELLVQVGRKM 60
           MRF  LDLNLLVALD L+ ++++T AA  ++++Q A S  + RLR++F+DEL    GR++
Sbjct: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60

Query: 61  QPTPYALELAKPVREVLLTIRASITAKPVFDPAASKRHFRLVASDYLISVVFAQVIQKIH 120
             TP A  LA  +R+ LL I+ SI +  +F+PA S R FR++ SD++  V F +V++++ 
Sbjct: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120

Query: 121 QEAPQITFEMIGPGDSSAELLMRGEVDMMIVPERYLIEGHPAQLLFEEDHVCVVWRDNPE 180
           +EAP ++FE++ P D+  ELL RGEVD +I P+ ++   HP   LF++  V V    N +
Sbjct: 121 REAPGVSFELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNEQ 180

Query: 181 VGEHLTLEQYMQMGHISVGFGRNRHLSIEDWFMNQYGFNRRLEVITNDFNTLPQLLVGTV 240
           +   L+ E+YM MGH++  FGR    S+E W + ++G+ RR+E++   FN +P LL GT 
Sbjct: 181 LLGDLSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTK 240

Query: 241 RVATMHRRLAELYAGYLPLRLLPPPVKIPVMREFMLWHRSMDGDPMHRWLRERISD 296
           R+A +  RLA  +A  +PLR++  P+ +    E + W    + D    W+RE + D
Sbjct: 241 RIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREILLD 296