Pairwise Alignments

Query, 312 a.a., Nodulation protein d1 from Pseudomonas putida KT2440

Subject, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

 Score =  224 bits (570), Expect = 3e-63
 Identities = 117/292 (40%), Positives = 177/292 (60%)

Query: 1   MRFHHLDLNLLVALDILLEEQNITRAAERLHMTQSATSGVLGRLRTFFEDELLVQVGRKM 60
           MRF  LDLNLLVALD L+ E+ +T AA R+ ++Q A S  + RLRT+F DEL    GR++
Sbjct: 1   MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGREL 60

Query: 61  QPTPYALELAKPVREVLLTIRASITAKPVFDPAASKRHFRLVASDYLISVVFAQVIQKIH 120
            PTP A  LA  VR+ LL I+ S+ A    +PA S R FR++ SD++  V F +V++++ 
Sbjct: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLA 120

Query: 121 QEAPQITFEMIGPGDSSAELLMRGEVDMMIVPERYLIEGHPAQLLFEEDHVCVVWRDNPE 180
           +EAP ++FE++   D   ELL RG+VD +++P+ ++   HP   LF E  VCV    N +
Sbjct: 121 REAPGVSFELLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTNEQ 180

Query: 181 VGEHLTLEQYMQMGHISVGFGRNRHLSIEDWFMNQYGFNRRLEVITNDFNTLPQLLVGTV 240
           +   L+ E+YM MGH++  FGR    S E W + ++GF RR+E++   F  +P LL  T 
Sbjct: 181 LLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLPHTN 240

Query: 241 RVATMHRRLAELYAGYLPLRLLPPPVKIPVMREFMLWHRSMDGDPMHRWLRE 292
           R+A +  RL + +   +PLR++  P+      E + W    + DP + W+RE
Sbjct: 241 RIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWMRE 292