Pairwise Alignments

Query, 754 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 876 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  314 bits (804), Expect = 1e-89
 Identities = 186/450 (41%), Positives = 266/450 (59%), Gaps = 17/450 (3%)

Query: 293 FDALEHAQQ--VNQQLIVRLEDEHRRSSHA------AATDHLSGLHNRRQFVEVASQVLT 344
           +D    AQ+  V Q  ++   D   R  HA      A  D L+GL NR    +  +Q L 
Sbjct: 413 YDLYPLAQEAGVAQGAVLLFADIAERKRHADQIEYLAHHDALTGLPNRLLAEDRFNQALA 472

Query: 345 RQRGKRRLMAILFIDMDRFKSINDSLGHKIGDLLLQAVAGRIQRLLEPGDEASRFGGDEF 404
               +   +A+LF+D+D FK+INDSLGH++GD +L+AVA R++  L   D  SRFGGDEF
Sbjct: 473 AASRRGEQVALLFLDLDGFKTINDSLGHEVGDKVLRAVADRLRSHLRESDTVSRFGGDEF 532

Query: 405 VVLLAGERSEEQINAWVHELVQKLSATYALDGQEVNTSPSVGVSICPRDGQDIDSLIRSA 464
           +V++ G +  E I   + +L+  L    AL+  +++TS S+GV++ P DG+D  +L++ A
Sbjct: 533 LVIMPGLQQVEVIYPVIGKLLACLEQPLALEHYQLSTSVSIGVAVFPHDGRDFTTLMQKA 592

Query: 465 DAAMYSAKQAGRAQFRFFDPSLNLADIQAFTLEQAFGSALAERQFVLHYQPQMRLDTHQV 524
           D AMY AK AGR  +R FD ++NL   +   L   F   L   +FVLH QP       QV
Sbjct: 593 DTAMYHAKDAGRNTYRLFDEAMNLHAQETLRLRNNFQRGLDGDEFVLHLQP-------QV 645

Query: 525 QGYEALVRWDHPEFGLLYPDRFIDLAERSGFIVELGWEVLQLACEALSSWDAQ-GRKTRL 583
            G EALVRW      L+ P  FI +AE SGFIV LG  VL+ +C   + W  + GR+  +
Sbjct: 646 VGAEALVRWQDGS-RLIAPAHFIPVAESSGFIVPLGQWVLRESCRLAARWQRELGREVTI 704

Query: 584 AVNVSALQLRQADFADRLLSKLQHHGIAPQQLELEITETTILDPEGTAVAHLHTLRGAGL 643
           AVN+SA+Q ++ D    +   L   G+ P  LELE+TE+T+L+   + ++ L TLR  G+
Sbjct: 705 AVNISAIQFKRGDLERTVAEALAESGLPPHLLELELTESTLLNQTESVLSTLRTLRDQGV 764

Query: 644 GISLDDFGRGYAGFAHLHSLPLSKLKIDRSLIAALSNSHDDSPIVSSTIILAKRLGLEVV 703
            +S+DDFG GY+  A+L  L ++KLKID+S +  L    +D+ IV + I +A RL L  V
Sbjct: 765 RLSIDDFGTGYSSLAYLKRLAVNKLKIDQSFVRNLDGDAEDAAIVRAIIEMAHRLNLRTV 824

Query: 704 AEGVETREQVVYLKLAGCDIAQGYHFSRPL 733
           AEGVET E +  L+   CD AQGY+F+RPL
Sbjct: 825 AEGVETVEVLQSLRRFACDEAQGYYFARPL 854



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 139 RLPFLLPLTNSTGREIDNILLVHLDVGYLAVLFQSIDLGNSGLVRLLQ-DDGLERLRIDN 197
           +L   +P+  + G     + +  LD+ Y   LF +IDLG  G++   + DDG   LR   
Sbjct: 160 QLVVAMPIRRADG-SFAGVAMAPLDMRYFQQLFDAIDLGPRGVITFRRSDDGRLVLRRPE 218

Query: 198 SGVVTAGDLLQPPLPALNTEA----GMLTQYVAGDAYQSVY--RRVPEQGFSVVVSQRQA 251
                   L   P+  L  EA    G+++   A D  + VY  +R+ +  F V V     
Sbjct: 219 RPGTVNQTLSNNPM-HLRVEAGEREGVISYRAALDQMERVYAFKRIGDFPFYVAVGIAAK 277

Query: 252 EILAPSTLAYSRQFWLNLSMTLMILASLLWTL-RLLRKRQEAFDALEHAQQVNQQLI 307
           + LAP  L       + L + L  L  LLW L R  R+R  A  AL  +++  QQL+
Sbjct: 278 DFLAPWYLTLGITSGVEL-IFLAGLGLLLWRLDRAERRRAAASQALASSERRFQQLL 333