Pairwise Alignments

Query, 316 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score = 53.1 bits (126), Expect = 8e-12
 Identities = 79/299 (26%), Positives = 126/299 (42%), Gaps = 34/299 (11%)

Query: 1   MTDIERYLRAATRDNTRRSYQAAIEHFESHWGGFLPATAESIARYLADHADQ-HAVSTLR 59
           M   ER   A T  +  R  + A     S   G   A+A+ +  YL+  A Q    S+  
Sbjct: 15  MMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAGQGFKASSQA 74

Query: 60  QRLAALSQWH---VAQGF--PDPTKAPLVRQVLRGIRTLHPTPPKQAAPLLLQHLQTAVT 114
           +RL+AL Q++    A+G    DPT    +    +  RTL  T       L ++ +   + 
Sbjct: 75  RRLSALRQFYKFLYAEGLRTDDPTG---ILDAPKKARTLPKT-------LSIEDVTRLIG 124

Query: 115 CFEEEARQAREHHDLAALRRARRDSALLLLGFWRGFRGDELARLRIEHIQAQAGVGITLF 174
             E EA+   +  D+ A  R     AL+ L +  G R  EL  L    + AQ G      
Sbjct: 125 QAEAEAKSGSD--DVMAKLRMH---ALIELLYATGMRVSELVSLPAS-VLAQNG---RFL 175

Query: 175 LPRSKGDREALGVQHRTPALKALCPVTAYLQWLEVAGIAHGPVFRKLDRWGNLGDNALNS 234
           + R KG++E L V     A++A+    AY + L+        +F    + G+L       
Sbjct: 176 IIRGKGNKERL-VPLSQAAIRAM---RAYGEALQEESADSPWLFPSNGKSGHLPRQVFAR 231

Query: 235 NSLVGLLRRMLERAGVPAALYTGHSLRRGFATWATANGWELKSLMSYVGWKDAKSALRY 293
           +     L+ +  RAG+  A  + H LR  FA+   ANG +L+++   +G  D  +   Y
Sbjct: 232 D-----LKSLAARAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIY 285