Pairwise Alignments

Query, 316 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 369 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (258), Expect = 5e-27
 Identities = 83/313 (26%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 14  DNTRRSYQAAIEHFES----HWGGFLPATAESIARYLADHAD--------QHAVSTLRQR 61
           +NTRR Y+ +   FE     H    LPA   SI  ++    +        Q +  TL  R
Sbjct: 63  NNTRRVYRISFSFFEQYCLEHNLQSLPADPRSIISFIGHQKELLQASTGMQLSKQTLTTR 122

Query: 62  LAALSQWHVAQGFPDPTKAPLVRQVLRGIRTLHP--TPPKQAAPLLLQHLQTAVTCFEEE 119
           +AA+  +H+  GFP PT+ P V +V+RG+   H          P++   ++  +   +++
Sbjct: 123 IAAIRFYHIQAGFPTPTEHPQVIRVMRGLSRNHHRLVQDYDQQPIMYDEVELLIQAVDQQ 182

Query: 120 ARQAREHHDLAALRRARRDSALLLLGFWRGFRGDELARLRIEHIQAQAGVGITLFLPRSK 179
                  H L  LR    D A++ LG   GFR  ELA L++ ++       + + LP SK
Sbjct: 183 P------HPLLRLR----DKAIIQLGLQGGFRRSELANLKVHYLSFMRDK-LKVRLPFSK 231

Query: 180 GDREALGVQHRTPALKALCPVTAYLQWLEVAGIAHGPVFRKLDRWG------NLGDNA-- 231
            +++ L      P  +      A   WL  + I  G +FR + R G      ++ DN+  
Sbjct: 232 SNQQGLREWKSLPDSEPFAAYHAVKSWLNESQITDGHLFRSISRDGKTLRPYHVNDNSKP 291

Query: 232 ----------LNSNSLVGLLRRMLERAGVPAALYTGHSLRRGFATWATANGWELKSLMSY 281
                     LN + +  ++++   +AG+PA  Y  HSLR G  T    N  ++  +M+ 
Sbjct: 292 KSTFSRNSGFLNGDDIYRIIKQYCLKAGLPAQYYGAHSLRSGCVTQLHENNKDILYIMAR 351

Query: 282 VGWKDAKSALRYI 294
            G  D +S   Y+
Sbjct: 352 TGHTDPRSLRHYL 364