Pairwise Alignments

Query, 316 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 369 a.a., integrase family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 90.5 bits (223), Expect = 6e-23
 Identities = 99/328 (30%), Positives = 138/328 (42%), Gaps = 60/328 (18%)

Query: 7   YLRAATRDNTRRSYQAAIEHFESHW-----GGFLPATAESIARYLADHADQH------AV 55
           Y RAA  +NT ++Y     HF + W        LP + E I  YLAD A         +V
Sbjct: 58  YARAAASENTLKAYAKDWAHF-TRWCRMKGAEALPPSPELIGLYLADLASATGASPALSV 116

Query: 56  STLRQRLAALSQWHVAQ-GFPDPTKAPLVRQVLRGIRTLHPTPPKQAAPLLLQHLQTAVT 114
           S++ +RL+ ++ W+ AQ G     K   +  VL GI+  H  PP Q   +L + +   V 
Sbjct: 117 SSIERRLSGMA-WNFAQRGSTLDRKNRHIATVLAGIKRKHARPPVQKEAILAEDILAMVA 175

Query: 115 CFEEEARQAREHHDLAALRRARRDSALLLLGFWRGFRGDELARLRIEHIQAQA------- 167
               +              R  RD A+LL+GF  G R  E+  L  +H +          
Sbjct: 176 TLSFDL-------------RGLRDRAILLIGFAGGLRRSEIVSL--DHGKDDTPDSGGWV 220

Query: 168 ---GVGITLFLPRSKGDRE---ALGVQHRTPALKALCPVTAYLQWLEVAGIAHGPVFRKL 221
                G  L L    G RE   A G + RT      CPV A  QWL  A I  GPVF   
Sbjct: 221 NILEAGAILTLRGKTGWREVEIARGSKDRT------CPVHALEQWLHFARIDFGPVFVGT 274

Query: 222 DRWGNLGDNA-LNSNSLVGLLRRMLERAGVPA--------ALYTGHSLRRGFATWATANG 272
            R G     A LN   +  L++R +  AG+ +        AL++GHSLR G A+ A    
Sbjct: 275 SRDGKRALEARLNDKHVARLIKRTIRDAGIRSELPEKDRLALFSGHSLRAGLASSAEV-- 332

Query: 273 WELKSLMSYVGWKDAKSALRYIDSAQRF 300
            + + +   +G   A+   RY     RF
Sbjct: 333 -DERYVQKQLGHASAEMTRRYQRRRDRF 359